Cianci Michele, Helliwell John R, Suzuki Atsuo
European Molecular Biology Laboratory, Hamburg Outstation, c/o DESY, Notkestrasse 85, D-22603 Hamburg, Germany.
Acta Crystallogr D Biol Crystallogr. 2008 Dec;64(Pt 12):1196-209. doi: 10.1107/S0907444908030503. Epub 2008 Nov 18.
In the last decade, the popularity of sulfur SAD anomalous dispersion experiments has spread rapidly among synchrotron users as a quick and streamlined way of solving the phase problem in macromolecular crystallography. On beamline 10 at SRS (Daresbury Laboratory, UK), a versatile design has allowed test data sets to be collected at six wavelengths between 0.979 and 2.290 A in order to evaluate the importance and the interdependence of experimental variables such as the Bijvoet ratio, wavelength, resolution limit, data redundancy and absorbed X-ray dose in the sample per data set. All the samples used in the experiments were high-quality hen egg-white lysozyme crystals. X-radiation damage was found to affect disulfide bridges after the crystals had been given a total dose of 0.20 x 10(7) Gy. However, with such a total dose, it was still possible in all cases to find a strategy to collect data sets to determine the sulfur substructure and produce good-quality phases by choosing an optimum combination of wavelength, exposure time and redundancy. A |Delta(ano)|/sigma(Delta(ano)) greater than 1.5 for all resolution shells was a necessary requirement for successful sulfur SAD substructure location. Provided this is achieved, it seems possible to find an optimum compromise between wavelength, redundancy and dose to provide phasing information. The choice of the wavelength should then follow the sample composition and the diffracting properties of the crystal. For strongly diffracting crystals, wavelengths equal or shorter than 1.540 A can be selected to capture the available data (provided the Bijvoet ratio is reasonable), while a longer wavelength, to gain as high a Bijvoet ratio as possible, must be used for more weakly diffracting crystals. These results suggest that an approach to a sulfur SAD experiment based on a complete description of the crystal system and the instrument for data collection is useful.
在过去十年中,硫反常散射实验在同步加速器用户中迅速流行起来,成为解决大分子晶体学相位问题的一种快速且简便的方法。在英国达累斯伯里实验室SRS的10号光束线上,一种通用设计允许在0.979至2.290 Å的六个波长处收集测试数据集,以便评估诸如比吉沃特比率、波长、分辨率极限、数据冗余度以及每个数据集样品中吸收的X射线剂量等实验变量的重要性及其相互依赖性。实验中使用的所有样品均为高质量的鸡蛋清溶菌酶晶体。发现当晶体接受的总剂量达到0.20×10⁷ Gy后,X射线辐射损伤会影响二硫键。然而,即便在这样的总剂量下,在所有情况下仍有可能找到一种策略,通过选择波长、曝光时间和冗余度的最佳组合来收集数据集,以确定硫亚结构并生成高质量的相位。对于成功确定硫反常散射亚结构而言,所有分辨率壳层的|Δ(ano)|/σ(Δ(ano))大于1.5是必要条件。若能达到这一条件,似乎有可能在波长、冗余度和剂量之间找到最佳折衷方案以提供相位信息。波长的选择应依据样品组成和晶体的衍射特性。对于强衍射晶体,可选择等于或短于1.540 Å的波长来获取可用数据(前提是比吉沃特比率合理);而对于衍射较弱的晶体,则必须使用较长波长以尽可能提高比吉沃特比率。这些结果表明,基于对晶体系统和数据收集仪器的完整描述来开展硫反常散射实验的方法是有用的。