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A Sanger/pyrosequencing hybrid approach for the generation of high-quality draft assemblies of marine microbial genomes.一种用于生成海洋微生物基因组高质量草图组装的桑格/焦磷酸测序混合方法。
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Aerobic anoxygenic phototrophic bacteria in the Mid-Atlantic Bight and the North Pacific Gyre.大西洋中部海域和北太平洋环流中的需氧不产氧光合细菌。
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Putative novel photosynthetic reaction centre organizations in marine aerobic anoxygenic photosynthetic bacteria: insights from metagenomics and environmental genomics.海洋需氧不产氧光合细菌中假定的新型光合反应中心组织:来自宏基因组学和环境基因组学的见解
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Diurnal variation of cell proliferation in three bacterial taxa from coastal North Sea waters.北海沿岸海水中三种细菌类群细胞增殖的日变化。
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Mercury depth profiles in river and marine sediments measured by the diffusive gradients in thin films technique with two different specific resins.采用两种不同的特定树脂,通过薄膜扩散梯度技术测量河流和海洋沉积物中的汞深度剖面。
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一株能够进行有氧不产氧光合作用的海洋γ-变形菌的特性研究

Characterization of a marine gammaproteobacterium capable of aerobic anoxygenic photosynthesis.

作者信息

Fuchs Bernhard M, Spring Stefan, Teeling Hanno, Quast Christian, Wulf Jörg, Schattenhofer Martha, Yan Shi, Ferriera Steve, Johnson Justin, Glöckner Frank Oliver, Amann Rudolf

机构信息

Max Planck Institute for Marine Microbiology, Celsiusstrasse 1, D-28359 Bremen, Germany.

出版信息

Proc Natl Acad Sci U S A. 2007 Feb 20;104(8):2891-6. doi: 10.1073/pnas.0608046104. Epub 2007 Feb 13.

DOI:10.1073/pnas.0608046104
PMID:17299055
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC1815277/
Abstract

Members of the gammaproteobacterial clade NOR5/OM60 regularly form an abundant part, up to 11%, of the bacterioplankton community in coastal systems during the summer months. Here, we report the nearly complete genome sequence of one cultured representative, Congregibacter litoralis strain KT71, isolated from North Sea surface water. Unexpectedly, a complete photosynthesis superoperon, including genes for accessory pigments, was discovered. It has a high sequence similarity to BAC clones from Monterey Bay [Beja O, Suzuki MT, Heidelberg JF, Nelson WC, Preston CM, et al. (2002) Nature 415:630-633], which also share a nearly identical gene arrangement. Although cultures of KT71 show no obvious pigmentation, bacteriochlorophyll a and spirilloxanthin-like carotenoids could be detected by HPLC analysis in cell extracts. The presence of two potential BLUF (blue light using flavin adenine dinucleotide sensors), one of which was found adjacent to the photosynthesis operon in the genome, indicates a light- and redox-dependent regulation of gene expression. Like other aerobic anoxygenic phototrophs (AAnPs), KT71 is able to grow neither anaerobically nor photoautotrophically. Cultivation experiments and genomic evidence show that KT71 needs organic substrates like carboxylic acids, oligopeptides, or fatty acids for growth. The strain grows optimally under microaerobic conditions and actively places itself in a zone of approximately 10% oxygen saturation. The genome analysis of C. litoralis strain KT71 identifies the gammaproteobacterial marine AAnPs, postulated based on BAC sequences, as members of the NOR5/OM60 clade. KT71 enables future experiments investigating the importance of this group of gammaproteobacterial AAnPs in coastal environments.

摘要

γ-变形菌纲NOR5/OM60分支的成员在夏季经常构成沿海系统中浮游细菌群落的一个丰富部分,占比高达11%。在此,我们报告了从北海表层水分离出的一株培养代表菌株——滨海聚集杆菌KT71的近乎完整的基因组序列。出乎意料的是,发现了一个完整的光合作用超操纵子,包括辅助色素的基因。它与来自蒙特雷湾的BAC克隆具有高度的序列相似性[贝雅O,铃木MT,海德堡JF,纳尔逊WC,普雷斯顿CM等。(2002年)《自然》415:630 - 633],它们也具有几乎相同的基因排列。尽管KT71的培养物没有明显的色素沉着,但通过HPLC分析在细胞提取物中可检测到细菌叶绿素a和类螺旋藻黄素类胡萝卜素。存在两个潜在的蓝光利用黄素腺嘌呤二核苷酸传感器(BLUF),其中一个在基因组中与光合作用操纵子相邻,这表明基因表达受光和氧化还原依赖的调控。与其他好氧不产氧光合细菌(AAnP)一样,KT71既不能在厌氧条件下生长,也不能进行光自养生长。培养实验和基因组证据表明,KT71生长需要有机底物,如羧酸、寡肽或脂肪酸。该菌株在微需氧条件下生长最佳,并主动将自身置于约10%氧饱和度的区域。滨海聚集杆菌KT71菌株的基因组分析确定了基于BAC序列推测的γ-变形菌纲海洋AAnP为NOR5/OM60分支的成员。KT71使未来能够开展实验,研究这一类γ-变形菌纲AAnP在沿海环境中的重要性。