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为系统生物学实现高通量数据管理:生物信息学资源管理器

Enabling high-throughput data management for systems biology: the Bioinformatics Resource Manager.

作者信息

Shah Anuj R, Singhal Mudita, Klicker Kyle R, Stephan Eric G, Wiley H Steven, Waters Katrina M

机构信息

Biomolecular Systems Initiative, Pacific Northwest National Laboratory, Richland, WA, USA.

出版信息

Bioinformatics. 2007 Apr 1;23(7):906-9. doi: 10.1093/bioinformatics/btm031. Epub 2007 Feb 25.

Abstract

UNLABELLED

The Bioinformatics Resource Manager (BRM) is a software environment that provides the user with data management, retrieval and integration capabilities. Designed in collaboration with biologists, BRM simplifies mundane analysis tasks of merging microarray and proteomic data across platforms, facilitates integration of users' data with functional annotation and interaction data from public sources and provides connectivity to visual analytic tools through reformatting of the data for easy import or dynamic launching capability. BRM is developed using Java and other open-source technologies for free distribution.

AVAILABILITY

BRM, sample data sets and a user manual can be downloaded from http://www.sysbio.org/dataresources/brm.stm.

摘要

未标注

生物信息学资源管理器(BRM)是一个软件环境,为用户提供数据管理、检索和整合功能。BRM与生物学家合作设计,简化了跨平台合并微阵列和蛋白质组数据的日常分析任务,促进用户数据与来自公共来源的功能注释和相互作用数据的整合,并通过重新格式化数据以便轻松导入或具备动态启动功能,实现与可视化分析工具的连接。BRM使用Java和其他开源技术开发,可免费分发。

可用性

BRM、样本数据集和用户手册可从http://www.sysbio.org/dataresources/brm.stm下载。

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