Derewenda U, Brzozowski A M, Lawson D M, Derewenda Z S
Department of Biochemistry, University of Alberta, Edmonton, Canada.
Biochemistry. 1992 Feb 11;31(5):1532-41. doi: 10.1021/bi00120a034.
The crystal structure of an extracellular triglyceride lipase (from a fungus Rhizomucor miehei) inhibited irreversibly by diethyl p-nitrophenyl phosphate (E600) was solved by X-ray crystallographic methods and refined to a resolution of 2.65 A. The crystals are isomorphous with those of n-hexylphosphonate ethyl ester/lipase complex [Brzozowski, A. M., Derewenda, U., Derewenda, Z. S., Dodson, G. G., Lawson, D. M., Turkenburg, J. P., Bjorkling, F., Huge-Jensen, B., Patkar, S. A., & Thim, L. (1991) Nature 351, 491-494], where the conformational change was originally observed. The higher resolution of the present study allowed for a detailed analysis of the stereochemistry of the change observed in the inhibited enzyme. The movement of a 15 amino acid long "lid" (residues 82-96) is a hinge-type rigid-body motion which transports some of the atoms of a short alpha-helix (residues 85-91) by over 12 A. There are two hinge regions (residues 83-84 and 91-95) within which pronounced transitions of secondary structure between alpha and beta conformations are caused by dramatic changes of specific conformational dihedral angles (phi and psi). As a result of this change a hydrophobic area of ca. 800 A2 (8% of the total molecule surface) becomes exposed. Other triglyceride lipases are also known to have "lids" similar to the one observed in the R. miehei enzyme, and it is possible that the general stereochemistry of lipase activation at the oil-water interfaces inferred from the present X-ray study is likely to apply to the entire family of lipases.
采用X射线晶体学方法解析了被对硝基苯基磷酸二乙酯(E600)不可逆抑制的胞外甘油三酯脂肪酶(来自米黑根毛霉)的晶体结构,并将其精修至2.65 Å的分辨率。这些晶体与正己基膦酸乙酯/脂肪酶复合物的晶体同晶型[布佐夫斯基,A. M.,德雷文达,U.,德雷文达,Z. S.,多德森,G. G.,劳森,D. M.,图尔肯伯格,J. P.,比约克林,F.,胡格-延森,B.,帕特卡尔,S. A.,&蒂姆,L.(1991年)《自然》351,491 - 494],最初就是在那里观察到构象变化的。本研究更高的分辨率使得能够对在被抑制的酶中观察到的变化的立体化学进行详细分析。一个由15个氨基酸组成的“盖子”(82 - 96位残基)的移动是一种铰链式刚体运动,它将一个短α螺旋(85 - 91位残基)的一些原子移动了超过12 Å。有两个铰链区域(83 - 84位残基和91 - 95位残基),在其中特定构象二面角(φ和ψ)的剧烈变化导致了α和β构象之间二级结构的显著转变。由于这种变化,约800 Ų的疏水区域(占整个分子表面的8%)暴露出来。还已知其他甘油三酯脂肪酶也有类似于在米黑根毛霉酶中观察到的“盖子”,并且从目前的X射线研究推断出的脂肪酶在油水界面处激活的一般立体化学可能适用于整个脂肪酶家族。