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遗传振荡器网络的随机同步

Stochastic synchronization of genetic oscillator networks.

作者信息

Li Chunguang, Chen Luonan, Aihara Kazuyuki

机构信息

Centre for Nonlinear and Complex Systems, School of Electronic Engineering, University of Electronic Science and Technology of China, Chengdu 610054, PR China.

出版信息

BMC Syst Biol. 2007 Jan 9;1:6. doi: 10.1186/1752-0509-1-6.

Abstract

BACKGROUND

The study of synchronization among genetic oscillators is essential for the understanding of the rhythmic phenomena of living organisms at both molecular and cellular levels. Genetic networks are intrinsically noisy due to natural random intra- and inter-cellular fluctuations. Therefore, it is important to study the effects of noise perturbation on the synchronous dynamics of genetic oscillators. From the synthetic biology viewpoint, it is also important to implement biological systems that minimizing the negative influence of the perturbations.

RESULTS

In this paper, based on systems biology approach, we provide a general theoretical result on the synchronization of genetic oscillators with stochastic perturbations. By exploiting the specific properties of many genetic oscillator models, we provide an easy-verified sufficient condition for the stochastic synchronization of coupled genetic oscillators, based on the Lur'e system approach in control theory. A design principle for minimizing the influence of noise is also presented. To demonstrate the effectiveness of our theoretical results, a population of coupled repressillators is adopted as a numerical example.

CONCLUSION

In summary, we present an efficient theoretical method for analyzing the synchronization of genetic oscillator networks, which is helpful for understanding and testing the synchronization phenomena in biological organisms. Besides, the results are actually applicable to general oscillator networks.

摘要

背景

遗传振荡器之间同步性的研究对于在分子和细胞水平上理解生物体的节律现象至关重要。由于细胞内和细胞间自然的随机波动,遗传网络本质上是有噪声的。因此,研究噪声扰动对遗传振荡器同步动力学的影响很重要。从合成生物学的角度来看,实现能将扰动的负面影响最小化的生物系统也很重要。

结果

在本文中,基于系统生物学方法,我们给出了关于具有随机扰动的遗传振荡器同步性的一个一般性理论结果。通过利用许多遗传振荡器模型的特定性质,基于控制理论中的鲁里叶系统方法,我们给出了一个易于验证的耦合遗传振荡器随机同步的充分条件。还提出了一种将噪声影响最小化的设计原则。为了证明我们理论结果的有效性,采用了一群耦合的阻遏振荡子作为数值例子。

结论

总之,我们提出了一种分析遗传振荡器网络同步性的有效理论方法,这有助于理解和测试生物体内的同步现象。此外,这些结果实际上适用于一般的振荡器网络。

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