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磷酸盐矿物介导的核苷磷酸化作用

Nucleoside phosphorylation by phosphate minerals.

作者信息

Costanzo Giovanna, Saladino Raffaele, Crestini Claudia, Ciciriello Fabiana, Di Mauro Ernesto

机构信息

Istituto di Biologia e Patologia Molecolari, Consiglio Nazionale delle Ricerche, Pizalle Aldo Moro, 5, 00185 Rome, Italy.

出版信息

J Biol Chem. 2007 Jun 8;282(23):16729-35. doi: 10.1074/jbc.M611346200. Epub 2007 Apr 5.

Abstract

In the presence of formamide, crystal phosphate minerals may act as phosphate donors to nucleosides, yielding both 5'- and, to a lesser extent, 3'-phosphorylated forms. With the mineral Libethenite the formation of 5'-AMP can be as high as 6% of the adenosine input and last for at least 10(3) h. At high concentrations, soluble non-mineral phosphate donors (KH(2)PO(4) or 5'-CMP) afford 2'- and 2':3'-cyclic AMP in addition to 5'-and 3'-AMP. The phosphate minerals analyzed were Herderite Ca[BePO(4)F], Hureaulite Mn(2+)(5)(PO(3)(OH)(2)(PO(4))(2)(H(2)O)(4), Libethenite Cu(2+)(2)(PO(4))(OH), Pyromorphite Pb(5)(PO(4))(3)Cl, Turquoise Cu(2+)Al(6)(PO(4))(4)(OH)(8)(H(2)O)(4), Fluorapatite Ca(5)(PO(4))(3)F, Hydroxylapatite Ca(5)(PO(4))(3)OH, Vivianite Fe(2+)(3)(PO(4))(2)(H(2)O)(8), Cornetite Cu(2+)(3)(PO(4))(OH)(3), Pseudomalachite Cu(2+)(5)(PO(4))(2)(OH)(4), Reichenbachite Cu(2+)(5)(PO(4))(2)(OH)(4), and Ludjibaite Cu(2+)(5)(PO(4))(2)(OH)(4)). Based on their behavior in the formamide-driven nucleoside phosphorylation reaction, these minerals can be characterized as: 1) inactive, 2) low level phosphorylating agents, or 3) active phosphorylating agents. Instances were detected (Libethenite and Hydroxylapatite) in which phosphorylation occurs on the mineral surface, followed by release of the phosphorylated compounds. Libethenite and Cornetite markedly protect the beta-glycosidic bond. Thus, activated nucleic monomers can form in a liquid non-aqueous environment in conditions compatible with the thermodynamics of polymerization, providing a solution to the standard-state Gibbs free energy change (DeltaG degrees ') problem, the major obstacle for polymerizations in the liquid phase in plausible prebiotic scenarios.

摘要

在甲酰胺存在的情况下,结晶磷酸盐矿物可作为核苷的磷酸盐供体,生成5'-磷酸化形式,在较小程度上还生成3'-磷酸化形式。对于矿物羟磷铜铅矿,5'-AMP的生成量可达腺苷输入量的6%,且至少持续10³小时。在高浓度下,可溶性非矿物磷酸盐供体(KH₂PO₄或5'-CMP)除了生成5'-和3'-AMP外,还会生成2'-和2':3'-环化AMP。所分析的磷酸盐矿物有磷铍钙石Ca[BePO₄F]、水磷锰矿Mn₂⁺₅(PO₃(OH)₂(PO₄)₂(H₂O)₄、羟磷铜铅矿Cu₂⁺₂(PO₄)(OH)、磷氯铅矿Pb₅(PO₄)₃Cl、绿松石Cu₂⁺Al₆(PO₄)₄(OH)₈(H₂O)₄、氟磷灰石Ca₅(PO₄)₃F、羟磷灰石Ca₅(PO₄)₃OH、蓝铁矿Fe₂⁺₃(PO₄)₂(H₂O)₈、氯铜矿Cu₂⁺₃(PO₄)(OH)₃、假孔雀石Cu₂⁺₅(PO₄)₂(OH)₄、赖兴巴赫矿Cu₂⁺₅(PO₄)₂(OH)₄和卢吉巴矿Cu₂⁺₅(PO₄)₂(OH)₄。根据它们在甲酰胺驱动的核苷磷酸化反应中的行为,这些矿物可被表征为:1)无活性,2)低水平磷酸化剂,或3)活性磷酸化剂。已检测到(羟磷铜铅矿和羟磷灰石)在矿物表面发生磷酸化,随后释放出磷酸化化合物的情况。羟磷铜铅矿和氯铜矿能显著保护β-糖苷键。因此,活化的核酸单体可以在与聚合热力学相容的液态非水环境中形成,为标准态吉布斯自由能变化(ΔG°')问题提供了一个解决方案,这是在合理的前生物情景中液相聚合的主要障碍。

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