Suppr超能文献

通过自动高分辨率细丝追踪探测波动生物聚合物的弯曲动力学

Bending dynamics of fluctuating biopolymers probed by automated high-resolution filament tracking.

作者信息

Brangwynne Clifford P, Koenderink Gijsje H, Barry Ed, Dogic Zvonimir, MacKintosh Frederick C, Weitz David A

机构信息

Harvard School of Engineering and Applied Sciences, Harvard University, Cambridge, Massachusetts 02138, USA.

出版信息

Biophys J. 2007 Jul 1;93(1):346-59. doi: 10.1529/biophysj.106.096966. Epub 2007 Apr 6.

Abstract

Microscope images of fluctuating biopolymers contain a wealth of information about their underlying mechanics and dynamics. However, successful extraction of this information requires precise localization of filament position and shape from thousands of noisy images. Here, we present careful measurements of the bending dynamics of filamentous (F-)actin and microtubules at thermal equilibrium with high spatial and temporal resolution using a new, simple but robust, automated image analysis algorithm with subpixel accuracy. We find that slender actin filaments have a persistence length of approximately 17 microm, and display a q(-4)-dependent relaxation spectrum, as expected from viscous drag. Microtubules have a persistence length of several millimeters; interestingly, there is a small correlation between total microtubule length and rigidity, with shorter filaments appearing softer. However, we show that this correlation can arise, in principle, from intrinsic measurement noise that must be carefully considered. The dynamic behavior of the bending of microtubules also appears more complex than that of F-actin, reflecting their higher-order structure. These results emphasize both the power and limitations of light microscopy techniques for studying the mechanics and dynamics of biopolymers.

摘要

波动生物聚合物的显微镜图像包含了大量有关其潜在力学和动力学的信息。然而,要成功提取这些信息,需要从数千张噪声图像中精确确定细丝的位置和形状。在此,我们使用一种新的、简单但稳健的、具有亚像素精度的自动图像分析算法,以高空间和时间分辨率对丝状(F-)肌动蛋白和微管在热平衡状态下的弯曲动力学进行了精确测量。我们发现,细长的肌动蛋白丝的持久长度约为17微米,并呈现出与粘性阻力预期相符的q(-4)依赖的弛豫谱。微管的持久长度为几毫米;有趣的是,微管的总长度与刚性之间存在小的相关性,较短的细丝显得更柔软。然而,我们表明,这种相关性原则上可能源于必须仔细考虑的固有测量噪声。微管弯曲的动态行为也比F-肌动蛋白的更复杂,这反映了它们的高阶结构。这些结果强调了光学显微镜技术在研究生物聚合物力学和动力学方面的优势和局限性。

相似文献

3
Tension dynamics in semiflexible polymers. I. Coarse-grained equations of motion.半柔性聚合物中的张力动力学。I. 粗粒化运动方程。
Phys Rev E Stat Nonlin Soft Matter Phys. 2007 Mar;75(3 Pt 1):031905. doi: 10.1103/PhysRevE.75.031905. Epub 2007 Mar 7.
4
Elasticity of biopolymer filaments.生物聚合物长丝的弹性。
Acta Biomater. 2013 Jul;9(7):7320-5. doi: 10.1016/j.actbio.2013.03.001. Epub 2013 Mar 15.
6
Contractile stress generation by actomyosin gels.肌动球蛋白凝胶产生收缩应力。
Phys Rev E Stat Nonlin Soft Matter Phys. 2006 Nov;74(5 Pt 1):051912. doi: 10.1103/PhysRevE.74.051912. Epub 2006 Nov 17.
7
Mechanics model for actin-based motility.基于肌动蛋白的运动力学模型。
Phys Rev E Stat Nonlin Soft Matter Phys. 2009 Feb;79(2 Pt 1):021916. doi: 10.1103/PhysRevE.79.021916. Epub 2009 Feb 26.
10
Tension dynamics in semiflexible polymers. II. Scaling solutions and applications.半柔性聚合物中的张力动力学。II. 标度解及其应用。
Phys Rev E Stat Nonlin Soft Matter Phys. 2007 Mar;75(3 Pt 1):031906. doi: 10.1103/PhysRevE.75.031906. Epub 2007 Mar 7.

引用本文的文献

1
Dynamics of flexible filaments in oscillatory shear flows.振荡剪切流中柔性细丝的动力学
J Fluid Mech. 2023 Jan 19;955. doi: 10.1017/jfm.2022.1040. eCollection 2023 Jan 25.
8
Active Modulation of States of Prestress in Self-Assembled Short Peptide Gels.自组装短肽凝胶中预应力状态的主动调控。
Biomacromolecules. 2019 Apr 8;20(4):1719-1730. doi: 10.1021/acs.biomac.9b00085. Epub 2019 Mar 21.

本文引用的文献

6
Internal motility in stiffening actin-myosin networks.肌动蛋白-肌球蛋白网络硬化过程中的内部运动性。
Phys Rev Lett. 2004 Dec 31;93(26 Pt 1):268101. doi: 10.1103/PhysRevLett.93.268101. Epub 2004 Dec 20.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验