Suppr超能文献

小鼠表型数据库整合联盟:小鼠表型组数据资源的整合[已修正]

Mouse Phenotype Database Integration Consortium: integration [corrected] of mouse phenome data resources.

作者信息

Hancock John M, Adams Niels C, Aidinis Vassilis, Blake Andrew, Bogue Molly, Brown Steve D M, Chesler Elissa J, Davidson Duncan, Duran Christopher, Eppig Janan T, Gailus-Durner Valérie, Gates Hilary, Gkoutos Georgios V, Greenaway Simon, Hrabé de Angelis Martin, Kollias George, Leblanc Sophie, Lee Kirsty, Lengger Christoph, Maier Holger, Mallon Ann-Marie, Masuya Hiroshi, Melvin David G, Müller Werner, Parkinson Helen, Proctor Glenn, Reuveni Eli, Schofield Paul, Shukla Aadya, Smith Cynthia, Toyoda Tetsuro, Vasseur Laurent, Wakana Shigeharu, Walling Alison, White Jacqui, Wood Joe, Zouberakis Michalis

出版信息

Mamm Genome. 2007 Mar;18(3):157-63. doi: 10.1007/s00335-007-9004-x. Epub 2007 Apr 10.

Abstract

Understanding the functions encoded in the mouse genome will be central to an understanding of the genetic basis of human disease. To achieve this it will be essential to be able to characterize the phenotypic consequences of variation and alterations in individual genes. Data on the phenotypes of mouse strains are currently held in a number of different forms (detailed descriptions of mouse lines, first-line phenotyping data on novel mutations, data on the normal features of inbred lines) at many sites worldwide. For the most efficient use of these data sets, we have initiated a process to develop standards for the description of phenotypes (using ontologies) and file formats for the description of phenotyping protocols and phenotype data sets. This process is ongoing and needs to be supported by the wider mouse genetics and phenotyping communities to succeed. We invite interested parties to contact us as we develop this process further.

摘要

了解小鼠基因组中编码的功能对于理解人类疾病的遗传基础至关重要。要实现这一点,能够表征单个基因变异和改变的表型后果将必不可少。目前,有关小鼠品系表型的数据以多种不同形式(小鼠品系的详细描述、新突变的一线表型数据、近交系正常特征的数据)保存在全球许多地方。为了最有效地利用这些数据集,我们已启动一个进程,以制定表型描述标准(使用本体)以及表型分析方案和表型数据集描述的文件格式。这一进程正在进行中,需要更广泛的小鼠遗传学和表型分析群体的支持才能取得成功。在我们进一步推进这一进程时,我们邀请有兴趣的各方与我们联系。

相似文献

1
Mouse Phenotype Database Integration Consortium: integration [corrected] of mouse phenome data resources.
Mamm Genome. 2007 Mar;18(3):157-63. doi: 10.1007/s00335-007-9004-x. Epub 2007 Apr 10.
2
Collaborative Cross and Diversity Outbred data resources in the Mouse Phenome Database.
Mamm Genome. 2015 Oct;26(9-10):511-20. doi: 10.1007/s00335-015-9595-6. Epub 2015 Aug 19.
4
The Mouse Genome Database (MGD): from genes to mice--a community resource for mouse biology.
Nucleic Acids Res. 2005 Jan 1;33(Database issue):D471-5. doi: 10.1093/nar/gki113.
5
Mouse phenome database.
Nucleic Acids Res. 2009 Jan;37(Database issue):D720-30. doi: 10.1093/nar/gkn778. Epub 2008 Nov 5.
6
The mouse genome database (MGD): new features facilitating a model system.
Nucleic Acids Res. 2007 Jan;35(Database issue):D630-7. doi: 10.1093/nar/gkl940. Epub 2006 Nov 29.
7
The Mouse Genome Database (MGD): premier model organism resource for mammalian genomics and genetics.
Nucleic Acids Res. 2011 Jan;39(Database issue):D842-8. doi: 10.1093/nar/gkq1008. Epub 2010 Nov 3.
8
Mouse Phenome Project: understanding human biology through mouse genetics and genomics.
J Appl Physiol (1985). 2003 Oct;95(4):1335-7. doi: 10.1152/japplphysiol.00562.2003.
9
The International Mouse Phenotyping Consortium Web Portal, a unified point of access for knockout mice and related phenotyping data.
Nucleic Acids Res. 2014 Jan;42(Database issue):D802-9. doi: 10.1093/nar/gkt977. Epub 2013 Nov 4.
10
Phenosite: a web database integrating the mouse phenotyping platform and the experimental procedures in mice.
J Bioinform Comput Biol. 2007 Dec;5(6):1173-91. doi: 10.1142/s0219720007003168.

引用本文的文献

1
Reproducibility and replicability of rodent phenotyping in preclinical studies.
Neurosci Biobehav Rev. 2018 Apr;87:218-232. doi: 10.1016/j.neubiorev.2018.01.003. Epub 2018 Jan 31.
2
The digital revolution in phenotyping.
Brief Bioinform. 2016 Sep;17(5):819-30. doi: 10.1093/bib/bbv083. Epub 2015 Sep 29.
4
Disruption of mouse Cenpj, a regulator of centriole biogenesis, phenocopies Seckel syndrome.
PLoS Genet. 2012;8(11):e1003022. doi: 10.1371/journal.pgen.1003022. Epub 2012 Nov 15.
5
Genome-wide association studies in mice.
Nat Rev Genet. 2012 Nov;13(11):807-17. doi: 10.1038/nrg3335. Epub 2012 Oct 9.
6
Three ontologies to define phenotype measurement data.
Front Genet. 2012 May 28;3:87. doi: 10.3389/fgene.2012.00087. eCollection 2012.
7
Research resources: curating the new eagle-i discovery system.
Database (Oxford). 2012 Mar 20;2012:bar067. doi: 10.1093/database/bar067. Print 2012.
10
Disruption of mouse Slx4, a regulator of structure-specific nucleases, phenocopies Fanconi anemia.
Nat Genet. 2011 Feb;43(2):147-52. doi: 10.1038/ng.752. Epub 2011 Jan 16.

本文引用的文献

1
Understanding mammalian genetic systems: the challenge of phenotyping in the mouse.
PLoS Genet. 2006 Aug 25;2(8):e118. doi: 10.1371/journal.pgen.0020118.
2
Bio-ontologies: current trends and future directions.
Brief Bioinform. 2006 Sep;7(3):256-74. doi: 10.1093/bib/bbl027. Epub 2006 Aug 9.
3
FIMRe: Federation of International Mouse Resources: global networking of resource centers.
Mamm Genome. 2006 May;17(5):363-4. doi: 10.1007/s00335-006-0001-2.
4
The Mouse Genome Database (MGD): updates and enhancements.
Nucleic Acids Res. 2006 Jan 1;34(Database issue):D562-7. doi: 10.1093/nar/gkj085.
5
EMPReSS: standardized phenotype screens for functional annotation of the mouse genome.
Nat Genet. 2005 Nov;37(11):1155. doi: 10.1038/ng1105-1155.
6
EMPReSS: European mouse phenotyping resource for standardized screens.
Bioinformatics. 2005 Jun 15;21(12):2930-1. doi: 10.1093/bioinformatics/bti441. Epub 2005 Apr 12.
7
Using ontologies to describe mouse phenotypes.
Genome Biol. 2005;6(1):R8. doi: 10.1186/gb-2004-6-1-r8. Epub 2004 Dec 20.
8
The Mammalian Phenotype Ontology as a tool for annotating, analyzing and comparing phenotypic information.
Genome Biol. 2005;6(1):R7. doi: 10.1186/gb-2004-6-1-r7. Epub 2004 Dec 15.
9
Visualizing the laboratory mouse: capturing phenotype information.
Genetica. 2004 Sep;122(1):89-97. doi: 10.1007/s10709-004-1435-7.
10
The Mouse Phenome Project.
Genetica. 2004 Sep;122(1):71-4. doi: 10.1007/s10709-004-1438-4.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验