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第二届“生物与生物医学研究的最小信息”(MIBBI)研讨会会议报告

Meeting Report from the Second "Minimum Information for Biological and Biomedical Investigations" (MIBBI) workshop.

作者信息

Kettner Carsten, Field Dawn, Sansone Susanna-Assunta, Taylor Chris, Aerts Jan, Binns Nigel, Blake Andrew, Britten Cedrik M, de Marco Ario, Fostel Jennifer, Gaudet Pascale, González-Beltrán Alejandra, Hardy Nigel, Hellemans Jan, Hermjakob Henning, Juty Nick, Leebens-Mack Jim, Maguire Eamonn, Neumann Steffen, Orchard Sandra, Parkinson Helen, Piel William, Ranganathan Shoba, Rocca-Serra Philippe, Santarsiero Annapaola, Shotton David, Sterk Peter, Untergasser Andreas, Whetzel Patricia L

出版信息

Stand Genomic Sci. 2010 Dec 25;3(3):259-66. doi: 10.4056/sigs.147362.

Abstract

This report summarizes the proceedings of the second workshop of the 'Minimum Information for Biological and Biomedical Investigations' (MIBBI) consortium held on Dec 1-2, 2010 in Rüdesheim, Germany through the sponsorship of the Beilstein-Institute. MIBBI is an umbrella organization uniting communities developing Minimum Information (MI) checklists to standardize the description of data sets, the workflows by which they were generated and the scientific context for the work. This workshop brought together representatives of more than twenty communities to present the status of their MI checklists and plans for future development. Shared challenges and solutions were identified and the role of MIBBI in MI checklist development was discussed. The meeting featured some thirty presentations, wide-ranging discussions and breakout groups. The top outcomes of the two-day workshop as defined by the participants were: 1) the chance to share best practices and to identify areas of synergy; 2) defining a series of tasks for updating the MIBBI Portal; 3) reemphasizing the need to maintain independent MI checklists for various communities while leveraging common terms and workflow elements contained in multiple checklists; and 4) revision of the concept of the MIBBI Foundry to focus on the creation of a core set of MIBBI modules intended for reuse by individual MI checklist projects while maintaining the integrity of each MI project. Further information about MIBBI and its range of activities can be found at http://mibbi.org/.

摘要

本报告总结了“生物学和生物医学研究最小信息”(MIBBI)联盟第二次研讨会的会议进程。该研讨会于2010年12月1日至2日在德国吕德斯海姆举行,由贝尔斯坦研究所赞助。MIBBI是一个伞状组织,联合了多个致力于制定最小信息(MI)清单的团体,旨在规范数据集的描述、其生成的工作流程以及工作的科学背景。本次研讨会汇聚了二十多个团体的代表,展示他们MI清单的现状以及未来发展计划。会上识别了共同面临的挑战和解决方案,并讨论了MIBBI在MI清单制定中的作用。会议有大约三十场报告、广泛的讨论以及分组讨论。与会者确定的为期两天的研讨会的主要成果包括:1)有机会分享最佳实践并识别协同领域;2)确定了一系列更新MIBBI门户的任务;3)再次强调在利用多个清单中包含的通用术语和工作流程元素的同时,为不同团体维护独立MI清单的必要性;4)修订MIBBI铸造厂的概念,以专注于创建一组核心MIBBI模块,供各个MI清单项目重复使用,同时保持每个MI项目的完整性。有关MIBBI及其活动范围的更多信息可在http://mibbi.org/上找到。

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本文引用的文献

1
Meeting Report: BioSharing at ISMB 2010.
Stand Genomic Sci. 2010 Dec 4;3(3):254-8. doi: 10.4056/sigs/1403501.
3
Towards BioDBcore: a community-defined information specification for biological databases.
Nucleic Acids Res. 2011 Jan;39(Database issue):D7-10. doi: 10.1093/nar/gkq1173. Epub 2010 Nov 18.
4
Minimal information about T cell assays: the process of reaching the community of T cell immunologists in cancer and beyond.
Cancer Immunol Immunother. 2011 Jan;60(1):15-22. doi: 10.1007/s00262-010-0940-z. Epub 2010 Nov 16.
5
Best use of experimental data in cancer informatics.
Future Oncol. 2010 Oct;6(10):1551-62. doi: 10.2217/fon.10.108.
6
A large-scale protein-function database.
Nat Chem Biol. 2010 Nov;6(11):785. doi: 10.1038/nchembio.460.
8
ISA software suite: supporting standards-compliant experimental annotation and enabling curation at the community level.
Bioinformatics. 2010 Sep 15;26(18):2354-6. doi: 10.1093/bioinformatics/btq415. Epub 2010 Aug 2.
9
Minimum information about a protein affinity reagent (MIAPAR).
Nat Biotechnol. 2010 Jul;28(7):650-3. doi: 10.1038/nbt0710-650.
10
"MIATA"-minimal information about T cell assays.
Immunity. 2009 Oct 16;31(4):527-8. doi: 10.1016/j.immuni.2009.09.007.

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