Suppr超能文献

一种用于解析复杂网络中社区结构的信息论框架。

An information-theoretic framework for resolving community structure in complex networks.

作者信息

Rosvall Martin, Bergstrom Carl T

机构信息

Department of Biology, University of Washington, Seattle, WA 98195-1800, USA.

出版信息

Proc Natl Acad Sci U S A. 2007 May 1;104(18):7327-31. doi: 10.1073/pnas.0611034104. Epub 2007 Apr 23.

Abstract

To understand the structure of a large-scale biological, social, or technological network, it can be helpful to decompose the network into smaller subunits or modules. In this article, we develop an information-theoretic foundation for the concept of modularity in networks. We identify the modules of which the network is composed by finding an optimal compression of its topology, capitalizing on regularities in its structure. We explain the advantages of this approach and illustrate them by partitioning a number of real-world and model networks.

摘要

为了理解大规模生物、社会或技术网络的结构,将网络分解为更小的子单元或模块可能会有所帮助。在本文中,我们为网络模块化的概念建立了一个信息论基础。我们通过找到网络拓扑结构的最优压缩来识别其组成模块,利用结构中的规律。我们解释了这种方法的优点,并通过对一些真实世界和模型网络进行划分来说明这些优点。

相似文献

1
An information-theoretic framework for resolving community structure in complex networks.
Proc Natl Acad Sci U S A. 2007 May 1;104(18):7327-31. doi: 10.1073/pnas.0611034104. Epub 2007 Apr 23.
2
Graph theoretic modeling of large-scale semantic networks.
J Biomed Inform. 2006 Aug;39(4):451-64. doi: 10.1016/j.jbi.2005.10.007. Epub 2005 Dec 15.
3
Resolution limit in community detection.
Proc Natl Acad Sci U S A. 2007 Jan 2;104(1):36-41. doi: 10.1073/pnas.0605965104. Epub 2006 Dec 26.
4
Maps of random walks on complex networks reveal community structure.
Proc Natl Acad Sci U S A. 2008 Jan 29;105(4):1118-23. doi: 10.1073/pnas.0706851105. Epub 2008 Jan 23.
6
Organization of excitable dynamics in hierarchical biological networks.
PLoS Comput Biol. 2008 Sep 26;4(9):e1000190. doi: 10.1371/journal.pcbi.1000190.
7
Phylogenetic analysis of modularity in protein interaction networks.
BMC Bioinformatics. 2009 Oct 14;10:333. doi: 10.1186/1471-2105-10-333.
8
Effects of community structure on the dynamics of random threshold networks.
Phys Rev E Stat Nonlin Soft Matter Phys. 2013 Jan;87(1):012810. doi: 10.1103/PhysRevE.87.012810. Epub 2013 Jan 22.
10
The relationship between modularity and robustness in signalling networks.
J R Soc Interface. 2013 Sep 18;10(88):20130771. doi: 10.1098/rsif.2013.0771. Print 2013 Nov 6.

引用本文的文献

1
Mapping leadership and communities in EU-funded research through network analysis.
Open Res Eur. 2025 Aug 7;4:268. doi: 10.12688/openreseurope.18544.2. eCollection 2024.
2
Early insight into social network structure predicts climbing the social ladder.
Sci Adv. 2025 Jun 20;11(25):eads2133. doi: 10.1126/sciadv.ads2133.
3
Towards personalized precision functional mapping in infancy.
Imaging Neurosci (Camb). 2024 May 10;2:1-20. doi: 10.1162/imag_a_00165. eCollection 2024 May 1.
4
Hypothesis generation for rare and undiagnosed diseases through clustering and classifying time-versioned biological ontologies.
PLoS One. 2024 Dec 26;19(12):e0309205. doi: 10.1371/journal.pone.0309205. eCollection 2024.
5
Cell Type Differentiation Using Network Clustering Algorithms.
bioRxiv. 2024 Dec 7:2024.12.04.626793. doi: 10.1101/2024.12.04.626793.
6
Coordinated inflammation and immune response transcriptional regulation in breast cancer molecular subtypes.
Front Immunol. 2024 Jun 25;15:1357726. doi: 10.3389/fimmu.2024.1357726. eCollection 2024.
7
Network analysis of marmoset cortical connections reveals pFC and sensory clusters.
Front Neuroanat. 2024 Jun 12;18:1403170. doi: 10.3389/fnana.2024.1403170. eCollection 2024.
8
Simulated dynamical transitions in a heterogeneous marmoset pFC cluster.
Front Comput Neurosci. 2024 May 28;18:1398898. doi: 10.3389/fncom.2024.1398898. eCollection 2024.
9
A precision functional atlas of personalized network topography and probabilities.
Nat Neurosci. 2024 May;27(5):1000-1013. doi: 10.1038/s41593-024-01596-5. Epub 2024 Mar 26.
10
Community detection in hypergraphs via mutual information maximization.
Sci Rep. 2024 Mar 23;14(1):6933. doi: 10.1038/s41598-024-55934-5.

本文引用的文献

1
Cartography of complex networks: modules and universal roles.
J Stat Mech. 2005 Feb 1;2005(P02001):nihpa35573. doi: 10.1088/1742-5468/2005/02/P02001.
2
Resolution limit in community detection.
Proc Natl Acad Sci U S A. 2007 Jan 2;104(1):36-41. doi: 10.1073/pnas.0605965104. Epub 2006 Dec 26.
3
Statistical mechanics of community detection.
Phys Rev E Stat Nonlin Soft Matter Phys. 2006 Jul;74(1 Pt 2):016110. doi: 10.1103/PhysRevE.74.016110. Epub 2006 Jul 18.
4
Modularity and community structure in networks.
Proc Natl Acad Sci U S A. 2006 Jun 6;103(23):8577-82. doi: 10.1073/pnas.0601602103. Epub 2006 May 24.
5
Spontaneous evolution of modularity and network motifs.
Proc Natl Acad Sci U S A. 2005 Sep 27;102(39):13773-8. doi: 10.1073/pnas.0503610102. Epub 2005 Sep 20.
6
Uncovering the overlapping community structure of complex networks in nature and society.
Nature. 2005 Jun 9;435(7043):814-8. doi: 10.1038/nature03607.
7
Information-theoretic approach to network modularity.
Phys Rev E Stat Nonlin Soft Matter Phys. 2005 Apr;71(4 Pt 2):046117. doi: 10.1103/PhysRevE.71.046117. Epub 2005 Apr 14.
8
Functional cartography of complex metabolic networks.
Nature. 2005 Feb 24;433(7028):895-900. doi: 10.1038/nature03288.
9
Finding community structure in very large networks.
Phys Rev E Stat Nonlin Soft Matter Phys. 2004 Dec;70(6 Pt 2):066111. doi: 10.1103/PhysRevE.70.066111. Epub 2004 Dec 6.
10
Modularity from fluctuations in random graphs and complex networks.
Phys Rev E Stat Nonlin Soft Matter Phys. 2004 Aug;70(2 Pt 2):025101. doi: 10.1103/PhysRevE.70.025101. Epub 2004 Aug 19.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验