• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

斑马鱼心脏对慢性持续低氧反应的转录组分析

Transcriptome analysis of the response to chronic constant hypoxia in zebrafish hearts.

作者信息

Marques Ines J, Leito Jelani T D, Spaink Herman P, Testerink Janwillem, Jaspers Richard T, Witte Frans, van den Berg Sjoerd, Bagowski Christoph P

机构信息

Department of Integrative Zoology, Institute of Biology, University of Leiden, Wassenaarseweg 64, 2333 AL, Leiden, The Netherlands.

出版信息

J Comp Physiol B. 2008 Jan;178(1):77-92. doi: 10.1007/s00360-007-0201-4. Epub 2007 Sep 8.

DOI:10.1007/s00360-007-0201-4
PMID:17828398
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC2200676/
Abstract

Insufficient blood supply during acute infarction and chronic ischemia leads to tissue hypoxia which can significantly alter gene expression patterns in the heart. In contrast to most mammals, some teleost fishes are able to adapt to extremely low oxygen levels. We describe here that chronic constant hypoxia (CCH) leads to a smaller ventricular outflow tract, reduced lacunae within the central ventricular cavity and around the trabeculae and an increase in the number of cardiac myocyte nuclei per area in the hearts of two teleost species, zebrafish (Danio rerio) and cichlids (Haplochromis piceatus). In order to identify the molecular basis for the adaptations to CCH, we profiled the gene expression changes in the hearts of adult zebrafish. We have analyzed over 15,000 different transcripts and found 376 differentially regulated genes, of which 260 genes showed increased and 116 genes decreased expression levels. Two notch receptors (notch-2 and notch-3) as well as regulatory genes linked to cell proliferation were transcriptionally upregulated in hypoxic hearts. We observed a simultaneous increase in expression of IGF-2 and IGFbp1 and upregulation of several genes important for the protection against reactive oxygen species (ROS). We have identified here many novel genes involved in the response to CCH in the heart, which may have potential clinical implications in the future.

摘要

急性梗死和慢性缺血期间的血液供应不足会导致组织缺氧,进而显著改变心脏中的基因表达模式。与大多数哺乳动物不同,一些硬骨鱼类能够适应极低的氧气水平。我们在此描述,慢性持续性缺氧(CCH)会导致斑马鱼(Danio rerio)和丽鱼科鱼(Haplochromis piceatus)这两种硬骨鱼类心脏的心室流出道变小、中央心室腔和小梁周围的腔隙减少以及单位面积心肌细胞核数量增加。为了确定适应CCH的分子基础,我们分析了成年斑马鱼心脏中的基因表达变化。我们分析了超过15000种不同的转录本,发现了376个差异调节基因,其中260个基因表达水平升高,116个基因表达水平降低。缺氧心脏中两个Notch受体(Notch-2和Notch-3)以及与细胞增殖相关的调节基因在转录水平上上调。我们观察到IGF-2和IGFbp1的表达同时增加,以及几个对抵御活性氧(ROS)重要的基因上调。我们在此鉴定出许多参与心脏对CCH反应的新基因,这些基因未来可能具有潜在的临床意义。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e85d/2200676/1b7fa30ef39a/360_2007_201_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e85d/2200676/3b5eb7d4ed83/360_2007_201_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e85d/2200676/5f51652e544f/360_2007_201_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e85d/2200676/c9f744c5ad6c/360_2007_201_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e85d/2200676/dd14971e4cec/360_2007_201_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e85d/2200676/1b7fa30ef39a/360_2007_201_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e85d/2200676/3b5eb7d4ed83/360_2007_201_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e85d/2200676/5f51652e544f/360_2007_201_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e85d/2200676/c9f744c5ad6c/360_2007_201_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e85d/2200676/dd14971e4cec/360_2007_201_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e85d/2200676/1b7fa30ef39a/360_2007_201_Fig5_HTML.jpg

相似文献

1
Transcriptome analysis of the response to chronic constant hypoxia in zebrafish hearts.斑马鱼心脏对慢性持续低氧反应的转录组分析
J Comp Physiol B. 2008 Jan;178(1):77-92. doi: 10.1007/s00360-007-0201-4. Epub 2007 Sep 8.
2
Novel Genes Critical for Hypoxic Preconditioning in Zebrafish Are Regulators of Insulin and Glucose Metabolism.斑马鱼中对缺氧预处理至关重要的新基因是胰岛素和葡萄糖代谢的调节因子。
G3 (Bethesda). 2015 Apr 3;5(6):1107-16. doi: 10.1534/g3.115.018010.
3
Gene expression profile of zebrafish exposed to hypoxia during development.发育过程中暴露于低氧环境的斑马鱼的基因表达谱
Physiol Genomics. 2003 Apr 16;13(2):97-106. doi: 10.1152/physiolgenomics.00128.2002.
4
Leptin: clue to poor appetite in oxygen-starved fish.瘦素:缺氧鱼类食欲不振的线索。
Mol Cell Endocrinol. 2010 May 5;319(1-2):143-6. doi: 10.1016/j.mce.2010.01.018. Epub 2010 Jan 18.
5
Gene expression and phenotypic characterization of mouse heart after chronic constant or intermittent hypoxia.慢性持续性或间歇性缺氧后小鼠心脏的基因表达及表型特征
Physiol Genomics. 2005 Aug 11;22(3):292-307. doi: 10.1152/physiolgenomics.00217.2004. Epub 2005 May 31.
6
Study on Tibetan Chicken embryonic adaptability to chronic hypoxia by revealing differential gene expression in heart tissue.通过揭示心脏组织中差异基因表达研究藏鸡胚胎对慢性缺氧的适应性
Sci China C Life Sci. 2009 Mar;52(3):284-95. doi: 10.1007/s11427-009-0005-8. Epub 2009 Mar 18.
7
Chronic reduction in cardiac output induces hypoxic signaling in larval zebrafish even at a time when convective oxygen transport is not required.即使在不需要对流性氧气运输的时候,心脏输出量的慢性减少也会在幼鱼斑马鱼中诱导缺氧信号。
Physiol Genomics. 2010 Sep;42A(1):8-23. doi: 10.1152/physiolgenomics.00052.2010. Epub 2010 Jun 22.
8
Transcriptomics approach to investigate zebrafish heart regeneration.基于转录组学的斑马鱼心脏再生研究。
J Cardiovasc Med (Hagerstown). 2010 May;11(5):369-80. doi: 10.2459/JCM.0b013e3283375900.
9
Regulation of expression of zebrafish (Danio rerio) insulin-like growth factor 2 receptor: implications for evolution at the IGF2R locus.斑马鱼(Danio rerio)胰岛素样生长因子2受体表达的调控:对IGF2R基因座进化的影响
Evol Dev. 2009 Sep-Oct;11(5):546-58. doi: 10.1111/j.1525-142X.2009.00361.x.
10
Gene expression profiling of the long-term adaptive response to hypoxia in the gills of adult zebrafish.成年斑马鱼鳃对缺氧长期适应性反应的基因表达谱分析。
Am J Physiol Regul Integr Comp Physiol. 2005 Nov;289(5):R1512-9. doi: 10.1152/ajpregu.00089.2005. Epub 2005 Jun 30.

引用本文的文献

1
The impact of adult and lifelong hypoxia on ventricle phenotype in zebrafish ().成年期和终身低氧对斑马鱼心室表型的影响()。
Am J Physiol Regul Integr Comp Physiol. 2025 Jul 1;329(1):R230-R243. doi: 10.1152/ajpregu.00033.2025. Epub 2025 Jun 13.
2
Transcriptomic atlas for hypoxia and following re-oxygenation in heart and brain tissues: insights into gene expression, alternative splicing, and signaling pathways.心脏和脑组织中缺氧及复氧后的转录组图谱:对基因表达、可变剪接和信号通路的见解
Front Genet. 2024 Apr 16;15:1365285. doi: 10.3389/fgene.2024.1365285. eCollection 2024.
3
Transcriptomic changes behind Sparus aurata hepatic response to different aquaculture challenges: An RNA-seq study and multiomics integration.

本文引用的文献

1
Cardiac adaptation to chronic high-altitude hypoxia: beneficial and adverse effects.心脏对慢性高原缺氧的适应:有益和不利影响。
Respir Physiol Neurobiol. 2007 Sep 30;158(2-3):224-36. doi: 10.1016/j.resp.2007.03.005. Epub 2007 Mar 12.
2
Oxidative stress and disuse muscle atrophy.氧化应激与废用性肌肉萎缩
J Appl Physiol (1985). 2007 Jun;102(6):2389-97. doi: 10.1152/japplphysiol.01202.2006. Epub 2007 Feb 8.
3
Zebrafish cypher is important for somite formation and heart development.斑马鱼的肌动蛋白结合蛋白对体节形成和心脏发育很重要。
转录组变化背后的 Sparus aurata 肝脏对不同水产养殖挑战的反应:RNA-seq 研究和多组学整合。
PLoS One. 2024 Mar 22;19(3):e0300472. doi: 10.1371/journal.pone.0300472. eCollection 2024.
4
The hypoxia response pathway in the Antarctic fish Notothenia coriiceps is functional despite a poly Q/E insertion mutation in HIF-1α.南极鱼(Notothenia coriiceps)中的低氧反应通路在 HIF-1α 中存在多 Q/E 插入突变的情况下仍具有功能。
Comp Biochem Physiol Part D Genomics Proteomics. 2024 Jun;50:101218. doi: 10.1016/j.cbd.2024.101218. Epub 2024 Feb 18.
5
Comparative Analysis of Heart Regeneration: Searching for the Key to Heal the Heart-Part II: Molecular Mechanisms of Cardiac Regeneration.心脏再生的比较分析:探寻治愈心脏的关键——第二部分:心脏再生的分子机制
J Cardiovasc Dev Dis. 2023 Aug 22;10(9):357. doi: 10.3390/jcdd10090357.
6
Quantitative Proteomics and Network Analysis of Differentially Expressed Proteins in Proteomes of Icefish Muscle Mitochondria Compared with Closely Related Red-Blooded Species.与近缘有红细胞物种相比,冰鱼肌肉线粒体蛋白质组中差异表达蛋白质的定量蛋白质组学和网络分析
Biology (Basel). 2022 Jul 26;11(8):1118. doi: 10.3390/biology11081118.
7
A Combined Human and CRISPR/Cas9-Mediated Zebrafish Based Approach to Provide Phenotypic Data for Supporting Early Target Validation.一种结合人类和CRISPR/Cas9介导的斑马鱼方法,用于提供支持早期靶点验证的表型数据。
Front Pharmacol. 2022 Apr 25;13:827686. doi: 10.3389/fphar.2022.827686. eCollection 2022.
8
The Inhibitory Effect of Selected D Dopaminergic Receptor Agonists on VEGF-Dependent Neovascularization in Zebrafish Larvae: Potential New Therapy in Ophthalmic Diseases.选定的 D 多巴胺能受体激动剂对斑马鱼幼虫中 VEGF-D 依赖性血管生成的抑制作用:眼科疾病的潜在新疗法。
Cells. 2022 Apr 2;11(7):1202. doi: 10.3390/cells11071202.
9
Genetics Responses to Hypoxia and Reoxygenation Stress in Revealed via Transcriptome Analysis and Weighted Gene Co-Expression Network.通过转录组分析和加权基因共表达网络揭示缺氧和复氧应激下的遗传学反应
Animals (Basel). 2021 Oct 20;11(11):3021. doi: 10.3390/ani11113021.
10
Genome-wide association analysis of adaptation to oxygen stress in Nile tilapia (Oreochromis niloticus).全基因组关联分析尼罗罗非鱼(Oreochromis niloticus)对氧气应激的适应。
BMC Genomics. 2021 Jun 9;22(1):426. doi: 10.1186/s12864-021-07486-5.
Dev Biol. 2006 Nov 15;299(2):356-72. doi: 10.1016/j.ydbio.2006.07.032. Epub 2006 Aug 4.
4
Roles of insulin-like growth factor II in cardiomyoblast apoptosis and in hypertensive rat heart with abdominal aorta ligation.胰岛素样生长因子II在心肌母细胞凋亡及腹主动脉结扎高血压大鼠心脏中的作用。
Am J Physiol Endocrinol Metab. 2006 Aug;291(2):E306-14. doi: 10.1152/ajpendo.00127.2005.
5
Notch signalling regulates stem cell numbers in vitro and in vivo.Notch信号通路在体外和体内调节干细胞数量。
Nature. 2006 Aug 17;442(7104):823-6. doi: 10.1038/nature04940. Epub 2006 Jun 25.
6
Akt1 is required for physiological cardiac growth.生理性心脏生长需要Akt1。
Circulation. 2006 May 2;113(17):2097-104. doi: 10.1161/CIRCULATIONAHA.105.595231. Epub 2006 Apr 24.
7
Physiology and pathology of notch signalling system.Notch信号系统的生理学与病理学
J Cell Physiol. 2006 May;207(2):300-8. doi: 10.1002/jcp.20542.
8
Cell death, tissue hypoxia and the progression of heart failure.细胞死亡、组织缺氧与心力衰竭的进展
Heart Fail Rev. 2000 Jun;5(2):131-8. doi: 10.1023/A:1009880720032.
9
Myocardial stiffness, cardiac remodeling, and diastolic dysfunction in calcification-prone fetuin-A-deficient mice.易发生钙化的胎球蛋白A缺乏小鼠的心肌僵硬度、心脏重塑和舒张功能障碍
J Am Soc Nephrol. 2005 Nov;16(11):3357-64. doi: 10.1681/ASN.2005040365. Epub 2005 Sep 21.
10
Krogh's diffusion coefficient for oxygen in isolated Xenopus skeletal muscle fibers and rat myocardial trabeculae at maximum rates of oxygen consumption.在非洲爪蟾离体骨骼肌纤维和大鼠心肌小梁中,氧气在最大耗氧率时的克罗格扩散系数。
J Appl Physiol (1985). 2005 Dec;99(6):2173-80. doi: 10.1152/japplphysiol.00470.2005. Epub 2005 Jul 28.