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本文引用的文献

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Site-specific conversion of cysteine thiols into thiocyanate creates an IR probe for electric fields in proteins.将半胱氨酸硫醇位点特异性转化为硫氰酸盐可创建一种用于探测蛋白质中电场的红外探针。
J Am Chem Soc. 2006 Oct 18;128(41):13356-7. doi: 10.1021/ja0650403.
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Electric fields at the active site of an enzyme: direct comparison of experiment with theory.酶活性位点处的电场:实验与理论的直接比较
Science. 2006 Jul 14;313(5784):200-4. doi: 10.1126/science.1127159.
3
Testing electrostatic complementarity in enzyme catalysis: hydrogen bonding in the ketosteroid isomerase oxyanion hole.测试酶催化中的静电互补性:酮甾类异构酶氧负离子洞中的氢键作用
PLoS Biol. 2006 Apr;4(4):e99. doi: 10.1371/journal.pbio.0040099. Epub 2006 Mar 28.
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Vibrational Stark effects calibrate the sensitivity of vibrational probes for electric fields in proteins.振动斯塔克效应校准了蛋白质中电场振动探针的灵敏度。
Biochemistry. 2003 Oct 21;42(41):12050-5. doi: 10.1021/bi0352926.
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Computational study of ketosteroid isomerase: insights from molecular dynamics simulation of enzyme bound substrate and intermediate.酮甾体异构酶的计算研究:来自酶结合底物和中间体分子动力学模拟的见解
J Am Chem Soc. 2003 Jun 25;125(25):7553-61. doi: 10.1021/ja030138s.
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Mutational analysis of the three cysteines and active-site aspartic acid 103 of ketosteroid isomerase from Pseudomonas putida biotype B.恶臭假单胞菌生物型B中酮甾体异构酶的三个半胱氨酸和活性位点天冬氨酸103的突变分析
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配体结合和溶剂排除会改变酶活性位点氧负离子洞内部的静电特性吗?

Do ligand binding and solvent exclusion alter the electrostatic character within the oxyanion hole of an enzymatic active site?

作者信息

Sigala Paul A, Fafarman Aaron T, Bogard Patrick E, Boxer Steven G, Herschlag Daniel

机构信息

Departments of Chemistry and Biochemistry, Stanford University, Stanford, California 94305-5307, USA.

出版信息

J Am Chem Soc. 2007 Oct 10;129(40):12104-5. doi: 10.1021/ja075605a. Epub 2007 Sep 14.

DOI:10.1021/ja075605a
PMID:17854190
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3171184/
Abstract

We report the site-specific incorporation of a thiocyanate vibrational probe into the active site oxyanion hole of ketosteroid isomerase (KSI) to test the effect of hydrophobic steroid binding and solvent exclusion on the local electrostatic environment at this position. While binding of an uncharged ground state steroid analog shifts the observed –CN vibrational frequency by +0.4 cm relative to unliganded KSI, binding of an intermediate steroid analog containing localized negative charge results in a +2.8 cm shift. Based on a Stark tuning rate of 0.7 cm/(MV/cm), this shift indicates a fivefold larger change in the projection of the local electric field along the –CN bond in the presence of the charged ligand. Binding of a single ring phenolate with oxyanion charge localization equivalent to the intermediate steroid analog but lacking distal hydrocarbon rings results in an identical –CN peak shift. We conclude that solvent exclusion and replacement by hydrophobic steroid rings negligibly alter the electrostatic environment within the KSI oxyanion hole. Development of localized negative charge analogous to that of the dienolate intermediate during steroid isomerization dramatically increases the magnitude of the local electric field. This increase reflects field contributions from the localized negative charge itself as well as possible increased ordering of active site dipoles in response to charge localization.

摘要

我们报道了将硫氰酸盐振动探针位点特异性地掺入酮甾类异构酶(KSI)的活性位点氧负离子空穴中,以测试疏水性甾体结合和溶剂排除对该位置局部静电环境的影响。与未结合配体的KSI相比,不带电荷的基态甾体类似物的结合使观察到的-CN振动频率相对于未结合配体的KSI发生了+0.4 cm的位移,而含有局部负电荷的中间甾体类似物的结合导致了+2.8 cm的位移。基于0.7 cm/(MV/cm)的斯塔克调谐速率,这种位移表明在存在带电荷配体的情况下,局部电场沿-CN键投影的变化大了五倍。与中间甾体类似物具有相同氧负离子电荷定位但缺乏远端烃环的单环酚盐的结合导致相同的-CN峰位移。我们得出结论,溶剂排除和被疏水性甾体环取代对KSI氧负离子空穴内的静电环境影响可忽略不计。在甾体异构化过程中形成类似于双烯醇盐中间体的局部负电荷会显著增加局部电场的强度。这种增加反映了局部负电荷本身对电场的贡献,以及活性位点偶极子可能因电荷定位而增加的有序性。