Kremling Andreas, Bettenbrock Katja, Gilles Ernst Dieter
Max-Planck-Institut Magdeburg, Systems Biology, Sandtorstr, 1, 39106 Magdeburg, Germany.
BMC Syst Biol. 2007 Sep 13;1:42. doi: 10.1186/1752-0509-1-42.
Global control influences the regulation of many individual subsystems by superimposed regulator proteins. A prominent example is the control of carbohydrate uptake systems by the transcription factor Crp in Escherichia coli. A detailed understanding of the coordination of the control of individual transporters offers possibilities to explore the potential of microorganisms e.g. in biotechnology.
An o.d.e. based mathematical model is presented that maps a physiological parameter - the specific growth rate - to the sensor of the signal transduction unit, here a component of the bacterial phosphotransferase system (PTS), namely EIIACrr. The model describes the relation between the growth rate and the degree of phosphorylation of EIIA crr for a number of carbohydrates by a distinctive response curve, that differentiates between PTS transported carbohydrates and non-PTS carbohydrates. With only a small number of kinetic parameters, the model is able to describe a broad range of experimental steady-state and dynamical conditions.
The steady-state characteristic presented shows a relationship between the growth rate and the output of the sensor system PTS. The glycolytic flux that is measured by this sensor is a good indicator to represent the nutritional status of the cell.
全局调控通过叠加的调控蛋白影响许多单个子系统的调节。一个突出的例子是大肠杆菌中转录因子Crp对碳水化合物摄取系统的调控。深入了解单个转运蛋白调控的协调性为探索微生物在生物技术等领域的潜力提供了可能。
提出了一个基于常微分方程的数学模型,该模型将一个生理参数——比生长速率——映射到信号转导单元的传感器上,这里指细菌磷酸转移酶系统(PTS)的一个组分,即EIIACrr。该模型通过一条独特的响应曲线描述了多种碳水化合物的生长速率与EIIA crr磷酸化程度之间的关系,该曲线区分了PTS转运的碳水化合物和非PTS碳水化合物。仅用少量动力学参数,该模型就能描述广泛的实验稳态和动态条件。
所呈现的稳态特征显示了生长速率与传感器系统PTS输出之间的关系。由该传感器测量的糖酵解通量是表征细胞营养状态的良好指标。