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神经科学建模软件的互操作性:现状与未来方向。

Interoperability of neuroscience modeling software: current status and future directions.

作者信息

Cannon Robert C, Gewaltig Marc-Oliver, Gleeson Padraig, Bhalla Upinder S, Cornelis Hugo, Hines Michael L, Howell Fredrick W, Muller Eilif, Stiles Joel R, Wils Stefan, De Schutter Erik

机构信息

Textensor Limited, Edinburgh, UK.

出版信息

Neuroinformatics. 2007 Summer;5(2):127-38. doi: 10.1007/s12021-007-0004-5.

Abstract

Neuroscience increasingly uses computational models to assist in the exploration and interpretation of complex phenomena. As a result, considerable effort is invested in the development of software tools and technologies for numerical simulations and for the creation and publication of models. The diversity of related tools leads to the duplication of effort and hinders model reuse. Development practices and technologies that support interoperability between software systems therefore play an important role in making the modeling process more efficient and in ensuring that published models can be reliably and easily reused. Various forms of interoperability are possible including the development of portable model description standards, the adoption of common simulation languages or the use of standardized middleware. Each of these approaches finds applications within the broad range of current modeling activity. However more effort is required in many areas to enable new scientific questions to be addressed. Here we present the conclusions of the "Neuro-IT Interoperability of Simulators" workshop, held at the 11th computational neuroscience meeting in Edinburgh ( July 19-20 2006; http://www.cnsorg.org ). We assess the current state of interoperability of neural simulation software and explore the future directions that will enable the field to advance.

摘要

神经科学越来越多地使用计算模型来辅助探索和解释复杂现象。因此,人们投入了大量精力来开发用于数值模拟以及模型创建和发布的软件工具和技术。相关工具的多样性导致了工作的重复,并阻碍了模型的重用。因此,支持软件系统之间互操作性的开发实践和技术在提高建模过程的效率以及确保已发布的模型能够被可靠且轻松地重用方面发挥着重要作用。各种形式的互操作性都是可能的,包括开发便携式模型描述标准、采用通用模拟语言或使用标准化中间件。这些方法中的每一种都在当前广泛的建模活动中找到了应用。然而,在许多领域还需要付出更多努力,以便能够解决新的科学问题。在此,我们展示了在爱丁堡举行的第11届计算神经科学会议(2006年7月19 - 20日;http://www.cnsorg.org)上举办的“神经模拟器的信息技术互操作性”研讨会的结论。我们评估了神经模拟软件互操作性的当前状态,并探索能够推动该领域发展的未来方向。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/28b7/2658651/a0766580af3e/nihms-87578-f0001.jpg

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