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2dx_merge:二维晶体图像的数据管理与合并

2dx_merge: data management and merging for 2D crystal images.

作者信息

Gipson Bryant, Zeng Xiangyan, Stahlberg Henning

机构信息

Molecular and Cellular Biology, Briggs Hall, College of Biological Sciences, University of California at Davis, 1 Shields Avenue, Davis, CA 95616, USA.

出版信息

J Struct Biol. 2007 Dec;160(3):375-84. doi: 10.1016/j.jsb.2007.09.011. Epub 2007 Sep 25.

Abstract

Electron crystallography of membrane proteins determines the structure of membrane-reconstituted and two-dimensionally (2D) crystallized membrane proteins by low-dose imaging with the transmission electron microscope, and computer image processing. We have previously presented the software system 2dx, for user-friendly image processing of 2D crystal images. Its central component 2dx_image is based on the MRC program suite, and allows the optionally fully automatic processing of one 2D crystal image. We present here the program 2dx_merge, which assists the user in the management of a 2D crystal image processing project, and facilitates the merging of the data from multiple images. The merged dataset can be used as a reference to re-process all images, which usually improves the resolution of the final reconstruction. Image processing and merging can be applied iteratively, until convergence is reached. 2dx is available under the GNU General Public License at http://2dx.org.

摘要

膜蛋白的电子晶体学通过透射电子显微镜的低剂量成像和计算机图像处理来确定膜重构和二维(2D)结晶膜蛋白的结构。我们之前展示了软件系统2dx,用于对2D晶体图像进行用户友好的图像处理。其核心组件2dx_image基于MRC程序套件,允许对一张2D晶体图像进行可选的全自动处理。我们在此展示程序2dx_merge,它协助用户管理2D晶体图像处理项目,并促进来自多个图像的数据合并。合并后的数据集可作为参考来重新处理所有图像,这通常会提高最终重建的分辨率。图像处理和合并可以迭代应用,直到达到收敛。2dx可根据GNU通用公共许可证在http://2dx.org获得。

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本文引用的文献

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A maximum likelihood approach to two-dimensional crystals.
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