Farach-Carson Mary C, Brown Anissa J, Lynam Megan, Safran Jeffrey B, Carson Daniel D
Department of Biological Sciences, University of Delaware, Newark, DE 19716, USA.
Matrix Biol. 2008 Mar;27(2):150-60. doi: 10.1016/j.matbio.2007.09.007. Epub 2007 Oct 10.
Perlecan/HSPG2 is a large, multi-domain, multifunctional heparan sulfate proteoglycan with a wide tissue distribution. With the exception of its unique domain I, each of perlecan's other four domains shares sequence similarity to other protein families including low density lipoprotein (LDL) receptor, laminin alpha chain, neural cell adhesion molecule (NCAM), immunoglobulin (Ig) superfamily members, and epidermal growth factor (EGF). Previous studies demonstrated that glycosaminoglycan-bearing perlecan domain I supports early chondrogenesis and growth factor delivery. Other sites in the core protein interact with other matrix molecules and support cell adhesion, although the peptide sequences involved remain unidentified. To identify novel functional motifs within perlecan, we used a bioinformatics approach to predict regions likely to be on the exterior of the folded protein. Unique hydrophilic sequences of about 18 amino acids were selected for testing in cell adhesion assays. A novel peptide sequence (TWSKVGGHLRPGIVQSG) from an immunoglobulin (Ig) repeat in domain IV supported rapid cell adhesion, spreading and focal adhesion kinase (FAK) activation when compared to other peptides, a randomly scrambled sequence of the domain IV peptide or a negative control protein. MG-63 human osteosarcoma cells, epithelial cells and multipotent C(3)H10T1/2 cells, but not bone marrow cells, rapidly, i.e., within 30 min, formed focal adhesions and assembled an actin cytoskeleton on domain IV peptide. Cell lines differentially adhered to the domain IV peptide, suggesting adhesion is receptor specific. Adhesion was divalent cation independent and heparin sensitive, a finding that may explain some previously poorly understood observations obtained with intact perlecan. Collectively, these studies demonstrate the feasibility of using bioinformatics-based strategies to identify novel functional motifs in matrix proteins such as perlecan.
基底膜聚糖/HSPG2是一种大型、多结构域、多功能的硫酸乙酰肝素蛋白聚糖,广泛分布于各种组织中。除了其独特的结构域I外,基底膜聚糖的其他四个结构域中的每一个都与其他蛋白质家族具有序列相似性,包括低密度脂蛋白(LDL)受体、层粘连蛋白α链、神经细胞粘附分子(NCAM)、免疫球蛋白(Ig)超家族成员和表皮生长因子(EGF)。先前的研究表明,带有糖胺聚糖的基底膜聚糖结构域I支持早期软骨形成和生长因子传递。核心蛋白中的其他位点与其他基质分子相互作用并支持细胞粘附,尽管所涉及的肽序列尚未确定。为了鉴定基底膜聚糖中的新型功能基序,我们采用生物信息学方法预测折叠蛋白外部可能存在的区域。选择约18个氨基酸的独特亲水序列用于细胞粘附试验。与其他肽、结构域IV肽的随机打乱序列或阴性对照蛋白相比,来自结构域IV免疫球蛋白(Ig)重复序列的新型肽序列(TWSKVGGHLRPGIVQSG)支持快速细胞粘附、铺展和粘着斑激酶(FAK)激活。MG-63人骨肉瘤细胞、上皮细胞和多能C(3)H10T1/2细胞,而非骨髓细胞,能在30分钟内迅速在结构域IV肽上形成粘着斑并组装肌动蛋白细胞骨架。细胞系对结构域IV肽的粘附存在差异,表明粘附具有受体特异性。粘附不依赖二价阳离子且对肝素敏感,这一发现可能解释了一些先前对完整基底膜聚糖观察结果理解不佳的现象。总的来说,这些研究证明了使用基于生物信息学的策略来鉴定基质蛋白如基底膜聚糖中的新型功能基序的可行性。