Tsygankov Denis, Fisher Michael E
Institute for Physical Science and Technology, University of Maryland, College Park, MD 20742, USA.
Proc Natl Acad Sci U S A. 2007 Dec 4;104(49):19321-6. doi: 10.1073/pnas.0709911104. Epub 2007 Nov 28.
Single-molecule experiments on the motor protein kinesin have observed runs of backsteps and thus a negative, that is, reverse mean velocity, V, under superstall loads, F; but, counterintuitively, beyond stall, V(F) displays a shallow minimum and then decreases in magnitude. Conversely, under assisting loads V(F) rises to a maximum before decreasing monotonically. By contrast, while the velocity of myosin V also saturates under assisting loads, the motor moves backward increasingly rapidly under superstall loads. For both kinesin and myosin V this behavior is implied remarkably well by simple two-state kinetic models when extrapolated to large loads. To understand the origins of such results in general mechanoenzymes, biochemical kinetic descriptions are discussed on the basis of a free-energy landscape picture. It transpires that the large-load performance is determined by the geometrical placement of the intermediate mechanochemical states of the enzymatic cycles relative to the associated transition states. Explicit criteria are presented for N-state sequential kinetics, including side-reaction chains, etc., and for parallel-pathway models. Physical colocalization of biochemically distinct states generally implies large-load velocity saturation.
对驱动蛋白这种运动蛋白进行的单分子实验观察到了一系列的后退步,因此在超阻负载F下存在负的,即反向的平均速度V;但违反直觉的是,超过阻点后,V(F)呈现出一个浅的最小值,然后在大小上减小。相反,在助力负载下,V(F)在单调下降之前先上升到最大值。相比之下,虽然肌球蛋白V的速度在助力负载下也会饱和,但在超阻负载下,该驱动蛋白向后移动得越来越快。对于驱动蛋白和肌球蛋白V来说,当外推到较大负载时,简单的两态动力学模型能很好地预示这种行为。为了理解一般机械酶中此类结果的起源,基于自由能景观图讨论了生化动力学描述。结果表明,大负载性能由酶促循环的中间机械化学状态相对于相关过渡态的几何位置决定。给出了N态顺序动力学(包括副反应链等)和平行途径模型的明确标准。生化上不同状态的物理共定位通常意味着大负载速度饱和。