Suppr超能文献

处于超失速和大辅助负载下的机械酶揭示了结构特征。

Mechanoenzymes under superstall and large assisting loads reveal structural features.

作者信息

Tsygankov Denis, Fisher Michael E

机构信息

Institute for Physical Science and Technology, University of Maryland, College Park, MD 20742, USA.

出版信息

Proc Natl Acad Sci U S A. 2007 Dec 4;104(49):19321-6. doi: 10.1073/pnas.0709911104. Epub 2007 Nov 28.

Abstract

Single-molecule experiments on the motor protein kinesin have observed runs of backsteps and thus a negative, that is, reverse mean velocity, V, under superstall loads, F; but, counterintuitively, beyond stall, V(F) displays a shallow minimum and then decreases in magnitude. Conversely, under assisting loads V(F) rises to a maximum before decreasing monotonically. By contrast, while the velocity of myosin V also saturates under assisting loads, the motor moves backward increasingly rapidly under superstall loads. For both kinesin and myosin V this behavior is implied remarkably well by simple two-state kinetic models when extrapolated to large loads. To understand the origins of such results in general mechanoenzymes, biochemical kinetic descriptions are discussed on the basis of a free-energy landscape picture. It transpires that the large-load performance is determined by the geometrical placement of the intermediate mechanochemical states of the enzymatic cycles relative to the associated transition states. Explicit criteria are presented for N-state sequential kinetics, including side-reaction chains, etc., and for parallel-pathway models. Physical colocalization of biochemically distinct states generally implies large-load velocity saturation.

摘要

对驱动蛋白这种运动蛋白进行的单分子实验观察到了一系列的后退步,因此在超阻负载F下存在负的,即反向的平均速度V;但违反直觉的是,超过阻点后,V(F)呈现出一个浅的最小值,然后在大小上减小。相反,在助力负载下,V(F)在单调下降之前先上升到最大值。相比之下,虽然肌球蛋白V的速度在助力负载下也会饱和,但在超阻负载下,该驱动蛋白向后移动得越来越快。对于驱动蛋白和肌球蛋白V来说,当外推到较大负载时,简单的两态动力学模型能很好地预示这种行为。为了理解一般机械酶中此类结果的起源,基于自由能景观图讨论了生化动力学描述。结果表明,大负载性能由酶促循环的中间机械化学状态相对于相关过渡态的几何位置决定。给出了N态顺序动力学(包括副反应链等)和平行途径模型的明确标准。生化上不同状态的物理共定位通常意味着大负载速度饱和。

相似文献

2
Force-dependent stepping kinetics of myosin-V.肌球蛋白-V的力依赖型步进动力学
Biophys J. 2005 Jun;88(6):4402-10. doi: 10.1529/biophysj.104.053504. Epub 2005 Mar 11.
4
Model for kinetics of myosin-V molecular motors.肌球蛋白-V分子马达的动力学模型。
Biophys Chem. 2006 Apr 1;120(3):225-36. doi: 10.1016/j.bpc.2005.11.008. Epub 2005 Dec 28.
5
A Unified Walking Model for Dimeric Motor Proteins.二聚体马达蛋白的统一行走模型。
Biophys J. 2018 Nov 20;115(10):1981-1992. doi: 10.1016/j.bpj.2018.09.032. Epub 2018 Oct 16.
6
Phenomenological analysis of ATP dependence of motor proteins.现象学分析 ATP 依赖性的运动蛋白。
PLoS One. 2012;7(3):e32717. doi: 10.1371/journal.pone.0032717. Epub 2012 Mar 23.
8
Simple mechanochemistry describes the dynamics of kinesin molecules.简单机械化学描述了驱动蛋白分子的动力学。
Proc Natl Acad Sci U S A. 2001 Jul 3;98(14):7748-53. doi: 10.1073/pnas.141080498. Epub 2001 Jun 26.
10
Model for kinetics of wild-type and mutant kinesins.野生型和突变型驱动蛋白的动力学模型。
Biosystems. 2006 Apr;84(1):24-38. doi: 10.1016/j.biosystems.2005.09.008. Epub 2005 Dec 27.

引用本文的文献

1
Reversible catalysis.可逆催化作用
Nat Rev Chem. 2021 May;5(5):348-360. doi: 10.1038/s41570-021-00268-3. Epub 2021 Apr 30.
2
A Unified Walking Model for Dimeric Motor Proteins.二聚体马达蛋白的统一行走模型。
Biophys J. 2018 Nov 20;115(10):1981-1992. doi: 10.1016/j.bpj.2018.09.032. Epub 2018 Oct 16.
4
A Perspective on the Role of Myosins as Mechanosensors.肌球蛋白作为机械传感器作用的观点
Biophys J. 2016 Jun 21;110(12):2568-2576. doi: 10.1016/j.bpj.2016.05.021.
6
Design principles governing the motility of myosin V.肌球蛋白 V 运动性的设计原则。
Proc Natl Acad Sci U S A. 2013 Oct 22;110(43):E4059-68. doi: 10.1073/pnas.1312393110. Epub 2013 Oct 7.
7
Phenomenological analysis of ATP dependence of motor proteins.现象学分析 ATP 依赖性的运动蛋白。
PLoS One. 2012;7(3):e32717. doi: 10.1371/journal.pone.0032717. Epub 2012 Mar 23.
10
Unconventional processive mechanics of non-muscle myosin IIB.非肌球蛋白 IIB 的非常规的延伸力学性质。
J Biol Chem. 2010 Aug 20;285(34):26326-34. doi: 10.1074/jbc.M110.123851. Epub 2010 May 29.

本文引用的文献

1
Vectorial loading of processive motor proteins: implementing a landscape picture.进行性运动蛋白的矢量负载:实现一种景观图景。
J Phys Condens Matter. 2005 Nov 30;17(47):S3821-38. doi: 10.1088/0953-8984/17/47/013. Epub 2005 Nov 4.
3
Back-stepping, hidden substeps, and conditional dwell times in molecular motors.分子马达中的后向步进、隐藏子步骤和条件停留时间。
Phys Rev E Stat Nonlin Soft Matter Phys. 2007 Feb;75(2 Pt 1):021909. doi: 10.1103/PhysRevE.75.021909. Epub 2007 Feb 20.
4
Molecular motors: a theorist's perspective.分子马达:一位理论家的视角
Annu Rev Phys Chem. 2007;58:675-95. doi: 10.1146/annurev.physchem.58.032806.104532.
5
Myosin-V is a mechanical ratchet.肌球蛋白-V是一种机械棘轮。
Proc Natl Acad Sci U S A. 2006 Jun 6;103(23):8680-5. doi: 10.1073/pnas.0510191103. Epub 2006 May 26.
6
Kinesin crouches to sprint but resists pushing.驱动蛋白蹲下准备冲刺,但抵抗推力。
Proc Natl Acad Sci U S A. 2005 Nov 8;102(45):16209-14. doi: 10.1073/pnas.0507802102. Epub 2005 Oct 17.
7
From continuum Fokker-Planck models to discrete kinetic models.从连续福克-普朗克模型到离散动力学模型。
Biophys J. 2005 Sep;89(3):1551-63. doi: 10.1529/biophysj.104.055178. Epub 2005 Jul 1.
8
Mechanics of the kinesin step.驱动蛋白步移的力学原理。
Nature. 2005 May 19;435(7040):308-12. doi: 10.1038/nature03528.
9
Molecular motors: kinesin steps back.分子马达:驱动蛋白向后退。
Nature. 2005 May 19;435(7040):285-7. doi: 10.1038/435285a.

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验