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简单机械化学描述了驱动蛋白分子的动力学。

Simple mechanochemistry describes the dynamics of kinesin molecules.

作者信息

Fisher M E, Kolomeisky A B

机构信息

Institute for Physical Science and Technology, University of Maryland, College Park, MD 20742, USA.

出版信息

Proc Natl Acad Sci U S A. 2001 Jul 3;98(14):7748-53. doi: 10.1073/pnas.141080498. Epub 2001 Jun 26.

Abstract

Recently, Block and coworkers [Visscher, K., Schnitzer, M. J., & Block, S. M. (1999) Nature (London) 400, 184--189 and Schnitzer, M. J., Visscher, K. & Block, S. M. (2000) Nat. Cell Biol. 2, 718--723] have reported extensive observations of individual kinesin molecules moving along microtubules in vitro under controlled loads, F = 1 to 8 pN, with [ATP] = 1 microM to 2 mM. Their measurements of velocity, V, randomness, r, stalling force, and mean run length, L, reveal a need for improved theoretical understanding. We show, presenting explicit formulae that provide a quantitative basis for comparing distinct molecular motors, that their data are satisfactorily described by simple, discrete-state, sequential stochastic models. The simplest (N = 2)-state model with fixed load-distribution factors and kinetic rate constants concordant with stopped-flow experiments, accounts for the global (V, F, L, [ATP]) interdependence and, further, matches relative acceleration observed under assisting loads. The randomness, r(F,[ATP]), is accounted for by a waiting-time distribution, psi(1)(+)(t), [for the transition(s) following ATP binding] with a width parameter nu identical with (2)/<(Delta t)(2)> approximately 2.5, indicative of a dispersive stroke of mechanicity approximately 0.6 or of a few ( greater than or similar to nu - 1) further, kinetically coupled states: indeed, N = 4 (but not N = 3) models do well. The analysis reveals: (i) a substep of d(0) = 1.8--2.1 nm on ATP binding (consistent with structurally based suggestions); (ii) comparable load dependence for ATP binding and unbinding; (iii) a strong load dependence for reverse hydrolysis and subsequent reverse rates; and (iv) a large ( greater than or similar to 50-fold) increase in detachment rate, with a marked load dependence, following ATP binding.

摘要

最近,布洛克及其同事[维斯彻,K.,施尼策,M. J.,& 布洛克,S. M.(1999年)《自然》(伦敦)400, 184 - 189页以及施尼策,M. J.,维斯彻,K. & 布洛克,S. M.(2000年)《自然细胞生物学》2, 718 - 723页]报道了在可控负载(F = 1至8皮牛)、[ATP] = 1微摩尔至2毫摩尔条件下,单个驱动蛋白分子在体外沿微管移动的广泛观察结果。他们对速度V、随机性r、失速力和平均运行长度L的测量结果表明,需要改进理论理解。我们通过给出明确公式(这些公式为比较不同分子马达提供了定量基础)表明,他们的数据可以用简单的离散状态、顺序随机模型令人满意地描述。具有固定负载分布因子和与停流实验一致的动力学速率常数的最简单(N = 2)状态模型,解释了全局(V、F、L、[ATP])相互依赖性,并且进一步与在辅助负载下观察到的相对加速度相匹配。随机性r(F, [ATP])由等待时间分布ψ(1)(+)(t) [用于ATP结合后的转变]来解释,其宽度参数ν与(2)/<(Δt)(2)>近似为2.5,这表明机械性的分散冲程约为0.6或几个(大于或近似于ν - 1)进一步的、动力学耦合的状态:实际上,N = 4(但不是N = 3)模型表现良好。分析揭示:(i)ATP结合时d(0) = 1.8 - 2.1纳米的亚步长(与基于结构的推测一致);(ii)ATP结合和解离时类似的负载依赖性;(iii)反向水解及后续反向速率对负载的强烈依赖性;以及(iv)ATP结合后,解离速率大幅(大于或近似于50倍)增加,且具有明显的负载依赖性。

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本文引用的文献

1
Force production by single kinesin motors.单个驱动蛋白马达产生的力。
Nat Cell Biol. 2000 Oct;2(10):718-23. doi: 10.1038/35036345.
2
The conformational cycle of kinesin.驱动蛋白的构象循环。
Philos Trans R Soc Lond B Biol Sci. 2000 Apr 29;355(1396):459-64. doi: 10.1098/rstb.2000.0587.
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The force exerted by a molecular motor.分子马达施加的力。
Proc Natl Acad Sci U S A. 1999 Jun 8;96(12):6597-602. doi: 10.1073/pnas.96.12.6597.
7
The design plan of kinesin motors.驱动蛋白马达的设计方案。
Annu Rev Cell Dev Biol. 1997;13:745-77. doi: 10.1146/annurev.cellbio.13.1.745.
9
The load dependence of kinesin's mechanical cycle.驱动蛋白机械循环的负载依赖性。
Proc Natl Acad Sci U S A. 1997 Aug 5;94(16):8539-44. doi: 10.1073/pnas.94.16.8539.
10

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