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适者生存效应的简单准种模型:空间的作用。

Simple quasispecies models for the survival-of-the-flattest effect: The role of space.

作者信息

Sardanyés Josep, Elena Santiago F, Solé Ricard V

机构信息

Complex Systems Lab (ICREA-UPF), Barcelona Biomedical Research Park (PRBB-GRIB), Dr. Aiguader 88, 08003 Barcelona, Spain.

出版信息

J Theor Biol. 2008 Feb 7;250(3):560-8. doi: 10.1016/j.jtbi.2007.10.027. Epub 2007 Oct 30.

DOI:10.1016/j.jtbi.2007.10.027
PMID:18054366
Abstract

The survival-of-the-flattest effect postulates that under high mutation rates natural selection does not necessarily favor the faster replicators. Under such conditions, genotypes which are robust against deleterious mutational effects may be favored instead, even at the cost of a slower replication. This tantalizing hypothesis has been recently proved using digital organisms, subviral RNA plant pathogens (viroids), and an animal RNA virus. In this work we study a simple theoretical system composed by two competing quasispecies which are located at two widely different fitness landscapes that represent, respectively, a fit and a flat quasispecies. The fit quasispecies is characterized by high replication rate and low mutational robustness, whereas the flat quasispecies is characterized by low replication rate but high mutational robustness. By using a mean field model, in silico simulations with digital replicons and a two-dimensional spatial model given by a stochastic cellular automata (CA), we predict the presence of an absorbing first-order phase transition with critical slowing down between selection for replication speed and selection for mutational robustness, where the surpassing of a critical mutation rate involves the outcompetition of the fit quasispecies by the flat one. Furthermore, it is shown that space, which involves a lower critical mutation rate, broadens the conditions at which the survival-of-the-flattest may occur.

摘要

最扁平者生存效应假定,在高突变率下,自然选择不一定青睐复制速度更快的个体。在这种情况下,对有害突变效应具有鲁棒性的基因型反而可能受到青睐,即便其复制速度较慢。最近,这一引人入胜的假说已通过数字有机体、亚病毒RNA植物病原体(类病毒)和一种动物RNA病毒得到证实。在这项工作中,我们研究了一个简单的理论系统,该系统由两个相互竞争的准种组成,它们位于两个差异很大的适应度景观中,分别代表一个适应型准种和一个扁平型准种。适应型准种的特征是复制速度高但突变鲁棒性低,而扁平型准种的特征是复制速度低但突变鲁棒性高。通过使用平均场模型、对数字复制子进行计算机模拟以及由随机细胞自动机(CA)给出的二维空间模型,我们预测存在一个吸收性一阶相变,在对复制速度的选择和对突变鲁棒性的选择之间存在临界减速,其中超过临界突变率会导致适应型准种被扁平型准种淘汰。此外,研究表明,空间(其涉及较低的临界突变率)拓宽了最扁平者生存可能发生的条件。

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