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四种单细胞藻类(玫红嗜热栖热菌、莱茵衣藻、三角褐指藻和嗜热栖热菌)的基因组分析及其意义。 [校正后]

Genome analysis and its significance in four unicellular algae, Cyanidioschyzon [corrected] merolae, Ostreococcus tauri, Chlamydomonas reinhardtii, and Thalassiosira pseudonana.

作者信息

Misumi Osami, Yoshida Yamato, Nishida Keiji, Fujiwara Takayuki, Sakajiri Takayuki, Hirooka Syunsuke, Nishimura Yoshiki, Kuroiwa Tsuneyoshi

机构信息

Department of Life Science, Graduate School of Science, Rikkyo University, Tokyo 171-8501, Japan.

出版信息

J Plant Res. 2008 Jan;121(1):3-17. doi: 10.1007/s10265-007-0133-9. Epub 2007 Dec 12.

DOI:10.1007/s10265-007-0133-9
PMID:18074102
Abstract

Algae play a more important role than land plants in the maintenance of the global environment and productivity. Progress in genome analyses of these organisms means that we can now obtain information on algal genomes, global annotation and gene expression. The full genome information for several algae has already been analyzed. Whole genomes of the red alga Cyanidioschyzon [corrected] merolae, the green algae Ostreococcus tauri and Chlamydomonas reinhardtii, and the diatom Thalassiosira pseudonana have been sequenced. Genome composition and the features of cells among the four algae were compared. Each alga maintains basic genes as photosynthetic eukaryotes and possesses additional gene groups to represent their particular characteristics. This review discusses and introduces the latest research that makes the best use of the particular features of each organism and the significance of genome analysis to study biological phenomena. In particular, examples of post-genome studies of organelle multiplication in C. merolae based on analyzed genome information are presented.

摘要

藻类在维持全球环境和生产力方面比陆地植物发挥着更重要的作用。这些生物体基因组分析的进展意味着我们现在可以获取有关藻类基因组、全局注释和基因表达的信息。几种藻类的全基因组信息已经得到分析。红藻嗜热栖热放线菌(修正后为嗜热栖热蓝细菌)、绿藻莱茵衣藻和塔氏菱形藻以及硅藻三角褐指藻的全基因组已被测序。比较了这四种藻类的基因组组成和细胞特征。每种藻类作为光合真核生物都保留着基本基因,并拥有额外的基因组来体现其特定特征。本综述讨论并介绍了充分利用每种生物体特定特征的最新研究以及基因组分析对研究生物学现象的意义。特别是,基于已分析的基因组信息,给出了嗜热栖热蓝细菌细胞器增殖的后基因组研究实例。

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Genome analysis and its significance in four unicellular algae, Cyanidioschyzon [corrected] merolae, Ostreococcus tauri, Chlamydomonas reinhardtii, and Thalassiosira pseudonana.四种单细胞藻类(玫红嗜热栖热菌、莱茵衣藻、三角褐指藻和嗜热栖热菌)的基因组分析及其意义。 [校正后]
J Plant Res. 2008 Jan;121(1):3-17. doi: 10.1007/s10265-007-0133-9. Epub 2007 Dec 12.
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本文引用的文献

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The Chlamydomonas genome reveals the evolution of key animal and plant functions.衣藻基因组揭示了关键动植物功能的进化。
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Evolutionary dynamics of eukaryotic selenoproteomes: large selenoproteomes may associate with aquatic life and small with terrestrial life.真核生物硒蛋白组的进化动力学:大型硒蛋白组可能与水生生物相关,而小型硒蛋白组则与陆生生物相关。
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3-D ultrastructure of O. tauri: electron cryotomography of an entire eukaryotic cell.
10种植物中植物花青素基因家族的比较分析:以玉米为重点
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Genomics of Volvocine Algae.团藻目藻类的基因组学
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Structural organization of very small chromosomes: study on a single-celled evolutionary distant eukaryote Giardia intestinalis.极小染色体的结构组织:对单细胞进化距离较远的真核生物肠道贾第虫的研究
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Phylogenomic study of lipid genes involved in microalgal biofuel production-candidate gene mining and metabolic pathway analyses.参与微藻生物燃料生产的脂质基因的系统基因组学研究——候选基因挖掘和代谢途径分析。
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Comparative analysis of miRNAs and their targets across four plant species.四种植物物种中microRNA及其靶标的比较分析。
BMC Res Notes. 2011 Nov 8;4:483. doi: 10.1186/1756-0500-4-483.
9
Do red and green make brown?: perspectives on plastid acquisitions within chromalveolates.红色与绿色能形成棕色吗?:关于色藻门内质体获得的观点
Eukaryot Cell. 2011 Jul;10(7):856-68. doi: 10.1128/EC.00326-10. Epub 2011 May 27.
10
Ostreococcus tauri ADP-glucose pyrophosphorylase reveals alternative paths for the evolution of subunit roles.莱茵衣藻ADP-葡萄糖焦磷酸化酶揭示了亚基作用进化的替代途径。
J Biol Chem. 2009 Dec 4;284(49):34092-102. doi: 10.1074/jbc.M109.037614. Epub 2009 Sep 8.
O. tauri 的 3-D 超微结构:整个真核细胞的电子冷冻断层扫描。
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Identification and mitotic partitioning strategies of vacuoles in the unicellular red alga Cyanidioschyzon merolae.单细胞红藻梅洛拟球藻中液泡的鉴定及有丝分裂分配策略
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Proc Natl Acad Sci U S A. 2007 Mar 13;104(11):4736-41. doi: 10.1073/pnas.0609364104. Epub 2007 Mar 1.
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Males evolved from the dominant isogametic mating type.雄性由占主导地位的同配生殖类型进化而来。
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Eukaryot Cell. 2007 Feb;6(2):271-9. doi: 10.1128/EC.00235-06. Epub 2006 Dec 15.