Suppr超能文献

用核苷酸转移酶对[3'-32P]标记的tRNA进行测定氨酰化和肽键形成。

[3'-32P]-labeling tRNA with nucleotidyltransferase for assaying aminoacylation and peptide bond formation.

作者信息

Ledoux Sarah, Uhlenbeck Olke C

机构信息

Department of Biochemistry, Molecular Biology and Cell Biology, Northwestern University, Evanston, IL 60208, USA.

出版信息

Methods. 2008 Feb;44(2):74-80. doi: 10.1016/j.ymeth.2007.08.001.

Abstract

The analysis of reactions involving amino acids esterified to tRNAs traditionally uses radiolabeled amino acids. We describe here an alternative assay involving [3'-32P]-labeled tRNA followed by nuclease digestion and TLC analysis that permits aminoacylation to be monitored in an efficient, quantitative manner while circumventing many of the problems faced when using radiolabeled amino acids. We also describe a similar assay using [3'-32P]-labeled aa-tRNAs to determine the rate of peptide bond formation on the ribosome. This type of assay can also potentially be adapted to study other reactions involving an amino acid or peptide esterified to tRNA.

摘要

传统上,对涉及与tRNA酯化的氨基酸的反应进行分析时使用放射性标记的氨基酸。我们在此描述一种替代检测方法,该方法涉及[3'-32P]标记的tRNA,随后进行核酸酶消化和薄层层析分析,它能以高效、定量的方式监测氨酰化反应,同时规避使用放射性标记氨基酸时面临的许多问题。我们还描述了一种类似的检测方法,使用[3'-32P]标记的氨酰-tRNA来确定核糖体上肽键形成的速率。这种类型的检测方法也有可能适用于研究其他涉及与tRNA酯化的氨基酸或肽的反应。

相似文献

2
Synthesis and aminoacylation of 3'-amino-3'-deoxy transfer RNA and its activity in ribosomal protein synthesis.
Proc Natl Acad Sci U S A. 1973 Sep;70(9):2671-5. doi: 10.1073/pnas.70.9.2671.
3
Isomeric phenylalanyl-tRNAs. Position of the aminoacyl moiety during protein biosynthesis.
Proc Natl Acad Sci U S A. 1974 Nov;71(11):4317-21. doi: 10.1073/pnas.71.11.4317.
5
The many routes of bacterial transfer RNAs after aminoacylation.
Curr Opin Struct Biol. 2000 Feb;10(1):95-101. doi: 10.1016/s0959-440x(99)00055-x.
6
Amino acids are not all initially attached to the same position on transfer RNA molecules.
Proc Natl Acad Sci U S A. 1975 Aug;72(8):3044-8. doi: 10.1073/pnas.72.8.3044.
7
32P-labeling of bovine tryptophanyl-tRNA synthetase with [32P] Pyrophosphate.
Mol Biol Rep. 1981 Nov 30;8(1):17-20. doi: 10.1007/BF00798379.
8
Conformational requirements of tobacco mosaic virus RNA for aminoacylation and adenylation.
Nucleic Acids Res. 1985 Jan 25;13(2):347-54. doi: 10.1093/nar/13.2.347.
9
Amino acid specificity in translation.
Trends Biochem Sci. 2005 Dec;30(12):659-65. doi: 10.1016/j.tibs.2005.10.006. Epub 2005 Nov 2.
10
Novel tRNA aminoacylation mechanisms.
Mol Biosyst. 2007 Jun;3(6):408-18. doi: 10.1039/b618899k. Epub 2007 May 3.

引用本文的文献

1
Unexpected enzymatic function of an ancient nucleic acid-binding fold.
Nucleic Acids Res. 2025 Apr 22;53(8). doi: 10.1093/nar/gkaf328.
2
Strategies for detecting aminoacylation and aminoacyl-tRNA editing and in cells.
Isr J Chem. 2024 Sep;64(8-9). doi: 10.1002/ijch.202400009. Epub 2024 May 6.
3
multi-aminoacyl-tRNA synthetase complex formation limits promiscuous tRNA proofreading.
Front Microbiol. 2024 Jul 16;15:1445687. doi: 10.3389/fmicb.2024.1445687. eCollection 2024.
5
Rational design of the genetic code expansion toolkit for encoding of D-amino acids.
Front Genet. 2023 Oct 13;14:1277489. doi: 10.3389/fgene.2023.1277489. eCollection 2023.
6
Distinct localization of chiral proofreaders resolves organellar translation conflict in plants.
Proc Natl Acad Sci U S A. 2023 Jun 13;120(24):e2219292120. doi: 10.1073/pnas.2219292120. Epub 2023 Jun 5.
7
Mistranslation of the genetic code by a new family of bacterial transfer RNAs.
J Biol Chem. 2023 Jul;299(7):104852. doi: 10.1016/j.jbc.2023.104852. Epub 2023 May 22.
9
Switching a conflicted bacterial DTD-tRNA code is essential for the emergence of mitochondria.
Sci Adv. 2022 Jan 14;8(2):eabj7307. doi: 10.1126/sciadv.abj7307. Epub 2022 Jan 12.
10
Bacterial translation machinery for deliberate mistranslation of the genetic code.
Proc Natl Acad Sci U S A. 2021 Aug 31;118(35). doi: 10.1073/pnas.2110797118.

本文引用的文献

1
Pyrrolysine is not hardwired for cotranslational insertion at UAG codons.
Proc Natl Acad Sci U S A. 2007 Feb 27;104(9):3141-6. doi: 10.1073/pnas.0611634104. Epub 2007 Feb 20.
2
Recognition of pyrrolysine tRNA by the Desulfitobacterium hafniense pyrrolysyl-tRNA synthetase.
Nucleic Acids Res. 2007;35(4):1270-8. doi: 10.1093/nar/gkl1151. Epub 2007 Jan 31.
3
The early history of tRNA recognition by aminoacyl-tRNA synthetases.
J Biosci. 2006 Oct;31(4):477-88. doi: 10.1007/BF02705187.
4
Aminoacyl-tRNA synthesis by pre-translational amino acid modification.
RNA Biol. 2004 May;1(1):16-20. Epub 2004 May 28.
5
Mutational analysis reveals two independent molecular requirements during transfer RNA selection on the ribosome.
Nat Struct Mol Biol. 2007 Jan;14(1):30-6. doi: 10.1038/nsmb1183. Epub 2006 Dec 10.
6
Distinct kinetic mechanisms of the two classes of Aminoacyl-tRNA synthetases.
J Mol Biol. 2006 Aug 11;361(2):300-11. doi: 10.1016/j.jmb.2006.06.015. Epub 2006 Jun 27.
7
Selenoprotein synthesis: UGA does not end the story.
Biochimie. 2006 Nov;88(11):1561-71. doi: 10.1016/j.biochi.2006.04.015. Epub 2006 May 19.
8
Enzymatic aminoacylation of tRNA with unnatural amino acids.
Proc Natl Acad Sci U S A. 2006 Mar 21;103(12):4356-61. doi: 10.1073/pnas.0509219103. Epub 2006 Mar 13.
9
A uniform response to mismatches in codon-anticodon complexes ensures ribosomal fidelity.
Mol Cell. 2006 Feb 3;21(3):369-77. doi: 10.1016/j.molcel.2005.12.018.
10
The RNA-binding PUA domain of archaeal tRNA-guanine transglycosylase is not required for archaeosine formation.
J Biol Chem. 2006 Mar 17;281(11):6993-7001. doi: 10.1074/jbc.M512841200. Epub 2006 Jan 10.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验