Doster Wolfgang
Physics Department E13, Technical University Munich, 85748 Garching, Germany.
Eur Biophys J. 2008 Jun;37(5):591-602. doi: 10.1007/s00249-008-0274-3. Epub 2008 Feb 13.
The dynamics of hydrated proteins and of protein crystals can be studied within a wide temperature range, since the water of hydration does not crystallize at low temperature. Instead it turns into an amorphous glassy state below 200 K. Extending the temperature range facilitates the spectral separation of different molecular processes. The conformational motions of proteins show an abrupt enhancement near 180 K, which has been called a "dynamical transition". In this contribution various aspects of the transition are critically reviewed: the role of the instrumental resolution function in extracting displacements from neutron elastic scattering data and the question of the appropriate dynamic model, discrete transitions between states of different energy versus continuous diffusion inside a harmonic well, are discussed. A decomposition of the transition involving two motional components is performed: rotational transitions of methyl groups and small scale librations of side-chains, induced by water at the protein surface. Both processes create an enhancement of the observed amplitude. The onset occurs, when their time scale becomes compatible with the resolution of the spectrometer. The reorientational rate of hydration water follows a super-Arrhenius temperature dependence, a characteristic feature of a dynamical transition. It occurs only with hydrated proteins, while the torsional motion of methyl groups takes place also in the dehydrated or solvent-vitrified system. Finally, the role of fast hydrogen bond fluctuations contributing to the amplitude enhancement is discussed.
由于水合水在低温下不会结晶,而是在200 K以下转变为非晶玻璃态,因此可以在很宽的温度范围内研究水合蛋白质和蛋白质晶体的动力学。扩展温度范围有助于不同分子过程的光谱分离。蛋白质的构象运动在180 K附近显示出突然增强,这被称为“动力学转变”。在本论文中,对该转变的各个方面进行了批判性综述:讨论了仪器分辨率函数在从中子弹性散射数据中提取位移中的作用以及合适的动力学模型问题,即不同能量状态之间的离散转变与谐振阱内的连续扩散问题。对涉及两个运动分量的转变进行了分解:蛋白质表面的水诱导甲基的旋转转变和侧链的小尺度摆动。这两个过程都导致观察到的振幅增强。当它们的时间尺度与光谱仪的分辨率相匹配时,就会开始出现这种增强。水合水的重排速率遵循超阿伦尼乌斯温度依赖性,这是动力学转变的一个特征。它只在水合蛋白质中出现,而甲基的扭转运动在脱水或溶剂玻璃化系统中也会发生。最后,讨论了快速氢键波动对振幅增强的作用。