分类群抽样会影响从系统发育树推断宏观进化过程。 - Suppr

Taxon sampling affects inferences of macroevolutionary processes from phylogenetic trees.

作者信息

Heath Tracy A, Zwickl Derrick J, Kim Junhyong, Hillis David M

机构信息

Section of Integrative Biology and Center for Computational Biology and Bioinformatics, University of Texas at Austin, Austin, Texas 78712, USA.

出版信息

Syst Biol. 2008 Feb;57(1):160-6. doi: 10.1080/10635150701884640.

DOI:10.1080/10635150701884640

PMID:18300029

Abstract

摘要

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Taxon sampling affects inferences of macroevolutionary processes from phylogenetic trees.

作者信息

Heath Tracy A, Zwickl Derrick J, Kim Junhyong, Hillis David M

机构信息

Section of Integrative Biology and Center for Computational Biology and Bioinformatics, University of Texas at Austin, Austin, Texas 78712, USA.

出版信息

Syst Biol. 2008 Feb;57(1):160-6. doi: 10.1080/10635150701884640.

DOI:10.1080/10635150701884640

PMID:18300029

Abstract

摘要

相似文献

Taxon sampling affects inferences of macroevolutionary processes from phylogenetic trees.

Syst Biol. 2008 Feb;57(1):160-6. doi: 10.1080/10635150701884640.

Lineages-through-time plots of neutral models for speciation.

Math Biosci. 2008 Dec;216(2):163-71. doi: 10.1016/j.mbs.2008.09.006. Epub 2008 Sep 27.

Origination, extinction, and dispersal: integrative models for understanding present-day diversity gradients.

Am Nat. 2007 Aug;170 Suppl 2:S71-85. doi: 10.1086/519403.

Estimating a binary character's effect on speciation and extinction.

Syst Biol. 2007 Oct;56(5):701-10. doi: 10.1080/10635150701607033.

The ecological dynamics of clade diversification and community assembly.

Am Nat. 2008 Dec;172(6):E270-84. doi: 10.1086/593137.

Ecological limits and diversification rate: alternative paradigms to explain the variation in species richness among clades and regions.

Ecol Lett. 2009 Aug;12(8):735-43. doi: 10.1111/j.1461-0248.2009.01333.x. Epub 2009 Jun 22.

Age-dependent speciation can explain the shape of empirical phylogenies.

Syst Biol. 2015 May;64(3):432-40. doi: 10.1093/sysbio/syv001. Epub 2015 Jan 8.

Age-Dependent and Lineage-Dependent Speciation and Extinction in the Imbalance of Phylogenetic Trees.

Syst Biol. 2017 Nov 1;66(6):912-916. doi: 10.1093/sysbio/syx031.

New analytic results for speciation times in neutral models.

Bull Math Biol. 2008 May;70(4):1082-97. doi: 10.1007/s11538-007-9291-0. Epub 2008 Jan 3.

Asymmetries in phylogenetic diversification and character change can be untangled.

Evolution. 2008 Jan;62(1):241-7. doi: 10.1111/j.1558-5646.2007.00252.x. Epub 2007 Nov 1.

引用本文的文献

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J Mol Evol. 2024 Apr;92(2):181-206. doi: 10.1007/s00239-024-10162-3. Epub 2024 Mar 19.

The Limits of the Constant-rate Birth-Death Prior for Phylogenetic Tree Topology Inference.

Syst Biol. 2024 May 27;73(1):235-246. doi: 10.1093/sysbio/syad075.

Complete mitochondrial genome analyses confirm that bat Polychromophilus and ungulate Plasmodium constitute a distinct clade independent of other Plasmodium species.

Sci Rep. 2023 Nov 20;13(1):20258. doi: 10.1038/s41598-023-45551-z.

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Proc Biol Sci. 2023 Nov 29;290(2011):20231211. doi: 10.1098/rspb.2023.1211. Epub 2023 Nov 15.

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Sci Rep. 2022 Dec 21;12(1):22043. doi: 10.1038/s41598-022-26514-2.

Cryptic diversity impacts model selection and macroevolutionary inferences in diversification analyses.

Proc Biol Sci. 2022 Nov 30;289(1987):20221335. doi: 10.1098/rspb.2022.1335. Epub 2022 Nov 16.

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Ecol Evol. 2022 Jun 16;12(6):e9009. doi: 10.1002/ece3.9009. eCollection 2022 Jul.

Paleozoic origins of cheilostome bryozoans and their parental care inferred by a new genome-skimmed phylogeny.

Sci Adv. 2022 Apr;8(13):eabm7452. doi: 10.1126/sciadv.abm7452. Epub 2022 Mar 30.

Post-Alignment Adjustment and Its Automation.

Genes (Basel). 2021 Nov 18;12(11):1809. doi: 10.3390/genes12111809.

Tightly Constrained Genome Reduction and Relaxation of Purifying Selection during Secondary Plastid Endosymbiosis.

Mol Biol Evol. 2022 Jan 7;39(1). doi: 10.1093/molbev/msab295.

Taxon sampling affects inferences of macroevolutionary processes from phylogenetic trees.

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Taxon sampling affects inferences of macroevolutionary processes from phylogenetic trees.

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