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Ets转录因子的DNA结合结构域与靶DNA复合物的制备、结晶及初步X射线衍射分析

Preparation, crystallization and preliminary X-ray diffraction analysis of the DNA-binding domain of the Ets transcription factor in complex with target DNA.

作者信息

Suwa Yoshiaki, Nakamura Teruya, Toma Sachiko, Ikemizu Shinji, Kai Hirofumi, Yamagata Yuriko

机构信息

Graduate School of Pharmaceutical Sciences, Kumamoto University, Kumamoto 862-0973, Japan.

出版信息

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2008 Mar 1;64(Pt 3):171-4. doi: 10.1107/S1744309108002662. Epub 2008 Feb 23.

DOI:10.1107/S1744309108002662
PMID:18323600
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC2374153/
Abstract

The Ets2 transcription factor is a member of the Ets transcription-factor family. Ets2 plays a role in the malignancy of cancer and in Down's syndrome by regulating the transcription of various genes. The DNA-binding domain of Ets2 (Ets domain; ETSD), which contains residues that are highly conserved among Ets transcription-factor family members, was expressed as a GST-fusion protein. The aggregation of ETSD produced after thrombin cleavage could be prevented by treatment with NDSB-195 (nondetergent sulfobetaine 195). ETSD was crystallized in complex with DNA containing the Ets2 target sequence (GGAA) by the hanging-drop vapour-diffusion method. The best crystals were grown using 25% PEG 3350, 80 mM magnesium acetate, 50 mM sodium cacodylate pH 5.0/5.5 as the reservoir at 293 K. The crystals belonged to space group C2, with unit-cell parameters a = 85.89, b = 95.52, c = 71.89 A, beta = 101.7 degrees and a V(M) value of 3.56 A(3) Da(-1). Diffraction data were collected to a resolution of 3.0 A.

摘要

Ets2转录因子是Ets转录因子家族的成员之一。Ets2通过调节各种基因的转录,在癌症的恶性发展和唐氏综合征中发挥作用。Ets2的DNA结合结构域(Ets结构域;ETSD)含有在Ets转录因子家族成员中高度保守的残基,被表达为一种GST融合蛋白。凝血酶切割后产生的ETSD聚集可通过用NDSB-195(非去污剂磺基甜菜碱195)处理来防止。通过悬滴气相扩散法,使ETSD与含有Ets2靶序列(GGAA)的DNA形成复合物并结晶。最佳晶体是在293 K下,以25% PEG 3350、80 mM乙酸镁、50 mM二甲胂酸钠pH 5.0/5.5作为储液生长得到的。晶体属于空间群C2,晶胞参数为a = 85.89、b = 95.52、c = 71.89 Å、β = 101.7°,V(M)值为3.56 ų Da⁻¹。收集到的衍射数据分辨率为3.0 Å。

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