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利用硫 K 边和镍 L 边 X 射线吸收光谱探究 Ni(II)N2S2 配合物中的可变胺/酰胺连接:对镍超氧化物歧化酶活性位点的启示

Probing variable amine/amide ligation in Ni(II)N2S2 complexes using sulfur K-edge and nickel L-edge X-ray absorption spectroscopies: implications for the active site of nickel superoxide dismutase.

作者信息

Shearer Jason, Dehestani Ahmad, Abanda Franklin

机构信息

Department of Chemistry, University of Nevada, Reno, Nevada 89557, USA.

出版信息

Inorg Chem. 2008 Apr 7;47(7):2649-60. doi: 10.1021/ic7019878. Epub 2008 Mar 11.

DOI:10.1021/ic7019878
PMID:18330983
Abstract

Nickel superoxide dismutase (NiSOD) is a recently discovered metalloenzyme that catalyzes the disproportionation of O2(-) into O2 and H2O2. In its reduced state, the mononuclear Ni(II) ion is ligated by two cis-cysteinate sulfurs, an amine nitrogen (from the protein N-terminus), and an amide nitrogen (from the peptide backbone). Unlike many small molecule and metallopeptide-based NiN2S2 complexes, S-based oxygenation is not observed in NiSOD. Herein we explore the spectroscopic properties of a series of three Ni(II)N2S2 complexes (bisamine-ligated (bmmp-dmed)Ni(II), amine/amide-ligated (Ni(II)(BEAAM))(-), and bisamide-ligated (Ni(II)(emi))(2-)) with varying amine/amide ligation to determine the origin of the dioxygen stability of NiSOD. Ni L-edge X-ray absorption spectroscopy (XAS) demonstrates that there is a progression in ligand-field strength with (bmmp-dmed)Ni(II) having the weakest ligand field and (Ni(II)(emi))(2-)) having the strongest ligand field. Furthermore, these Ni L-edge XAS studies also show that all three complexes are highly covalent with (Ni(II)(BEEAM))(-) having the highest degree of metal-ligand covalency of the three compounds studied. S K-edge XAS also shows a high degree of Ni-S covalency in all three complexes. The electronic structures of the three complexes were probed using both hybrid-DFT and multiconfigurational SORCI calculations. These calculations demonstrate that the nucleophilic Ni(3d)/S(pi) HOMO of these NiN2S2 complexes progressively decreases in energy as the amide-nitrogens are replaced with amine nitrogens. This decrease in energy of the HOMO deactivates the Ni-center toward O2 reactivity. Thus, the Ni-S bond is protected from S-based oxygenation explaining the enhanced stability of the NiSOD active-site toward oxygenation by dioxygen.

摘要

镍超氧化物歧化酶(NiSOD)是一种最近发现的金属酶,它催化超氧阴离子(O2(*-))歧化为氧气(O2)和过氧化氢(H2O2)。在其还原状态下,单核Ni(II)离子由两个顺式半胱氨酸硫原子、一个胺基氮原子(来自蛋白质N端)和一个酰胺氮原子(来自肽主链)配位。与许多基于小分子和金属肽的NiN2S2配合物不同,在NiSOD中未观察到基于硫的氧化反应。在此,我们探索了一系列三种Ni(II)N2S2配合物(双胺配位的(bmmp-dmed)Ni(II)、胺/酰胺配位的(Ni(II)(BEAAM))(-)和双酰胺配位的(Ni(II)(emi))(2-))的光谱性质,这些配合物具有不同的胺/酰胺配位情况,以确定NiSOD中双氧稳定性的来源。Ni L边X射线吸收光谱(XAS)表明,配体场强度存在一个变化趋势,(bmmp-dmed)Ni(II)的配体场最弱,(Ni(II)(emi))(2-)的配体场最强。此外,这些Ni L边XAS研究还表明,所有三种配合物都具有高度的共价性,(Ni(II)(BEEAM))(-)在所研究的三种化合物中具有最高程度的金属-配体共价性。S K边XAS也表明所有三种配合物中都具有高度的Ni-S共价性。使用杂化密度泛函理论(hybrid-DFT)和多组态SORCI计算对这三种配合物的电子结构进行了探究。这些计算表明,随着酰胺氮原子被胺基氮原子取代,这些NiN2S2配合物的亲核Ni(3d)/S(π)*最高占据分子轨道(HOMO)的能量逐渐降低。HOMO能量的这种降低使Ni中心对O2的反应性失活。因此,Ni-S键受到保护,不会发生基于硫的氧化反应,这就解释了NiSOD活性位点对双氧氧化反应增强的稳定性。

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