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迈向单颗粒冷冻电子显微镜的原子分辨率结构测定。

Towards atomic resolution structural determination by single-particle cryo-electron microscopy.

作者信息

Zhou Z Hong

机构信息

Department of Microbiology, Immunology & Molecular Genetics and the California NanoSystems Institute, University of California at Los Angeles, 237 BSRB, 615 Charles E. Young Dr. S., Los Angeles, CA 90095-7364, USA.

出版信息

Curr Opin Struct Biol. 2008 Apr;18(2):218-28. doi: 10.1016/j.sbi.2008.03.004. Epub 2008 Apr 9.

DOI:10.1016/j.sbi.2008.03.004
PMID:18403197
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC2714865/
Abstract

Recent advances in cryo-electron microscopy and single-particle reconstruction (collectively referred to as 'cryoEM') have made it possible to determine the three-dimensional (3D) structures of several macromolecular complexes at near-atomic resolution ( approximately 3.8-4.5A). These achievements were accomplished by overcoming the challenges in sample handling, instrumentation, image processing, and model building. At near-atomic resolution, many detailed structural features can be resolved, such as the turns and deep grooves of helices, strand separation in beta sheets, and densities for loops and bulky amino acid side chains. Such structural data of the cytoplasmic polyhedrosis virus (CPV), the Epsilon 15 bacteriophage and the GroEL complex have provided valuable constraints for atomic model building using integrative tools, thus significantly enhancing the value of the cryoEM structures. The CPV structure revealed a drastic conformational change from a helix to a beta hairpin associated with RNA packaging and replication, coupling of RNA processing and release, and the long sought-after polyhedrin-binding domain. These latest advances in single-particle cryoEM provide exciting opportunities for the 3D structural determination of viruses and macromolecular complexes that are either too large or too heterogeneous to be investigated by conventional X-ray crystallography or nuclear magnetic resonance (NMR) methods.

摘要

冷冻电子显微镜技术和单颗粒重建技术(统称为“冷冻电镜”)的最新进展,使得以近原子分辨率(约3.8 - 4.5埃)确定几种大分子复合物的三维(3D)结构成为可能。这些成就是通过克服样品处理、仪器设备、图像处理和模型构建等方面的挑战而取得的。在近原子分辨率下,可以解析许多详细的结构特征,例如螺旋的转角和深沟、β折叠中的链分离以及环和庞大氨基酸侧链的密度。细胞质多角体病毒(CPV)、ε15噬菌体和GroEL复合物的此类结构数据,为使用整合工具构建原子模型提供了有价值的限制条件,从而显著提高了冷冻电镜结构的价值。CPV结构揭示了与RNA包装和复制、RNA加工与释放的耦合以及长期以来寻找的多角体蛋白结合结构域相关的从螺旋到β发夹的剧烈构象变化。单颗粒冷冻电镜的这些最新进展,为那些因太大或太不均一而无法用传统X射线晶体学或核磁共振(NMR)方法研究的病毒和大分子复合物的3D结构测定提供了令人兴奋的机会。

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