Braconi Quintaje Silvia, Orchard Sandra
Swiss-Prot group, Swiss Institute of Bioinformatics, CMU, 1 Michel Servet, 1211 Geneva 4, Switzerland.
Mol Cell Proteomics. 2008 Aug;7(8):1409-19. doi: 10.1074/mcp.R700001-MCP200. Epub 2008 Apr 24.
Biomolecule phosphorylation by protein kinases is a fundamental cell signaling process in all living cells. Following the comprehensive cataloguing of the protein kinase complement of the human genome (Manning, G., Whyte, D. B., Martinez, R., Hunter, T., and Sudarsanam, S. (2002) The protein kinase complement of the human genome. Science 298, 1912-1934), this review will detail the state-of-the-art human and mouse kinase proteomes as provided in the UniProtKB/Swiss-Prot protein knowledgebase. The sequences of the 480 classical and up to 24 atypical protein kinases now believed to exist in the human genome and 484 classical and up to 24 atypical kinases within the mouse genome have been reviewed and, where necessary, revised. Extensive annotation has been added to each entry. In an era when a wealth of new databases is emerging on the Internet, UniProtKB/Swiss-Prot makes available to the scientific community the most up-to-date and in-depth annotation of these proteins with access to additional external resources linked from within each entry. Incorrect sequence annotations resulting from errors and artifacts have been eliminated. Each entry will be constantly reviewed and updated as new information becomes available with the orthologous enzymes in related species being annotated in a parallel effort and complete kinomes being completed as sequences become available. This ensures that the mammalian kinomes available from UniProtKB/Swiss-Prot are of a consistently high standard with each separate entry acting both as a valuable information resource and a central portal to a wealth of further detail via extensive cross-referencing.
蛋白激酶介导的生物分子磷酸化是所有活细胞中基本的细胞信号传导过程。在完成人类基因组蛋白激酶补体的全面编目(曼宁,G.,怀特,D.B.,马丁内斯,R.,亨特,T.,以及苏达萨纳姆,S.(2002年)人类基因组的蛋白激酶补体。《科学》298卷,第1912 - 1934页)之后,本综述将详细介绍UniProtKB/瑞士蛋白质知识库中提供的最新人类和小鼠激酶蛋白质组。现已对目前认为存在于人类基因组中的480种经典和多达24种非典型蛋白激酶以及小鼠基因组中的484种经典和多达24种非典型激酶的序列进行了综述,并在必要时进行了修订。每个条目都添加了大量注释。在互联网上涌现出大量新数据库的时代,UniProtKB/瑞士蛋白质知识库为科学界提供了这些蛋白质的最新、最深入注释,并可访问每个条目中链接的其他外部资源。因错误和人为因素导致的错误序列注释已被消除。随着新信息的出现,每个条目将不断接受审查和更新,同时对相关物种的直系同源酶进行并行注释,并随着序列的可得性完成完整的激酶组注释。这确保了从UniProtKB/瑞士蛋白质知识库获得的哺乳动物激酶组具有始终如一的高标准,每个单独的条目既是宝贵的信息资源,又是通过广泛交叉引用获取大量进一步详细信息的中心门户。