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来自缨鳃虫目(环节动物)蠕虫三个线粒体基因组的系统发育信息及甲硫氨酸tRNA的重复

Phylogenetic information from three mitochondrial genomes of Terebelliformia (Annelida) worms and duplication of the methionine tRNA.

作者信息

Zhong Min, Struck Torsten H, Halanych Kenneth M

机构信息

Department of Biological Sciences, Auburn, AL 36849, USA.

出版信息

Gene. 2008 Jun 15;416(1-2):11-21. doi: 10.1016/j.gene.2008.02.020. Epub 2008 Mar 4.

Abstract

Mitochondrial genomes have been useful for inferring animal phylogeny across a wide range of clades, however they are still poorly sampled in some animal taxa, limiting our knowledge of mtDNA evolution. For example, despite being one of the most diverse animal phyla, only 5 complete annelid mitochrondial genomes have been published. To address this paucity of information, we obtained complete mitochondrial genomic sequences from Pista cristata (Terebellidae) and Terebellides stroemi (Trichobranchidae) as well as one nearly complete mitochondrial genome from Eclysippe vanelli (Ampharetidae). These taxa are within Terebelliformia (Annelida), which include spaghetti worms, icecream cone worms and their relatives. In contrast to the 37 genes found in most bilaterian metazoans, we recover 38 genes in the mitochondrial genomes of T. stroemi and P. cristata due to the presence of a second methionine tRNA (trnM). Interestingly, the two trnMs are located next to each other and are possibly a synapomorphy of these two taxa. The E. vanelli partial mitochondrial genome lacks this additional trnM at the same position, but it may be present in the region not sampled. Compared to other annelids, gene orders of these three mitochondrial genomes are generally conserved except for the atp6-mSSU region. Phylogenetic analyses reveal that mtDNA data strongly supports a Trichobranchidae/Terebellidae clade.

摘要

线粒体基因组对于推断广泛分类群中的动物系统发育很有用,然而在一些动物类群中它们的采样仍然不足,这限制了我们对线粒体DNA(mtDNA)进化的了解。例如,尽管环节动物门是最多样化的动物门类之一,但仅有5个完整的环节动物线粒体基因组被发表。为了解决信息匮乏的问题,我们获得了来自鬃丝蚓(缨鳃虫科)和斯特氏缨鳃虫(多毛缨虫科)的完整线粒体基因组序列,以及来自范氏艾氏蚓(蛰龙介科)的一个近乎完整的线粒体基因组。这些分类单元属于缨鳃虫目(环节动物门),其中包括须鳃虫、冰淇淋筒虫及其近亲。与大多数两侧对称后生动物中发现的37个基因不同,由于存在第二个甲硫氨酸转运RNA(trnM),我们在斯特氏缨鳃虫和鬃丝蚓的线粒体基因组中发现了38个基因。有趣的是,这两个trnM彼此相邻,可能是这两个分类单元的共有衍征。范氏艾氏蚓的部分线粒体基因组在相同位置缺少这个额外的trnM,但它可能存在于未采样的区域。与其他环节动物相比,这三个线粒体基因组的基因顺序除了atp6 - mSSU区域外总体上是保守的。系统发育分析表明,mtDNA数据强烈支持多毛缨虫科/缨鳃虫科分支。

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