Suppr超能文献

通过中子和X射线散射数据的同步分析确定的脂质双层结构。

Lipid bilayer structure determined by the simultaneous analysis of neutron and X-ray scattering data.

作者信息

Kucerka Norbert, Nagle John F, Sachs Jonathan N, Feller Scott E, Pencer Jeremy, Jackson Andrew, Katsaras John

机构信息

Canadian Neutron Beam Centre, National Research Council, Chalk River, Ontario K0J 1J0, Canada.

出版信息

Biophys J. 2008 Sep;95(5):2356-67. doi: 10.1529/biophysj.108.132662. Epub 2008 May 23.

Abstract

Quantitative structures were obtained for the fully hydrated fluid phases of dioleoylphosphatidylcholine (DOPC) and dipalmitoylphosphatidylcholine (DPPC) bilayers by simultaneously analyzing x-ray and neutron scattering data. The neutron data for DOPC included two solvent contrasts, 50% and 100% D(2)O. For DPPC, additional contrast data were obtained with deuterated analogs DPPC_d62, DPPC_d13, and DPPC_d9. For the analysis, we developed a model that is based on volume probability distributions and their spatial conservation. The model's design was guided and tested by a DOPC molecular dynamics simulation. The model consistently captures the salient features found in both electron and neutron scattering density profiles. A key result of the analysis is the molecular surface area, A. For DPPC at 50 degrees C A = 63.0 A(2), whereas for DOPC at 30 degrees C A = 67.4 A(2), with estimated uncertainties of 1 A(2). Although A for DPPC agrees with a recently reported value obtained solely from the analysis of x-ray scattering data, A for DOPC is almost 10% smaller. This improved method for determining lipid areas helps to reconcile long-standing differences in the values of lipid areas obtained from stand-alone x-ray and neutron scattering experiments and poses new challenges for molecular dynamics simulations.

摘要

通过同时分析X射线和中子散射数据,获得了二油酰磷脂酰胆碱(DOPC)和二棕榈酰磷脂酰胆碱(DPPC)双层完全水合流体相的定量结构。DOPC的中子数据包括两种溶剂对比度,50%和100% D₂O。对于DPPC,使用氘代类似物DPPC_d62、DPPC_d13和DPPC_d9获得了额外的对比度数据。为了进行分析,我们开发了一个基于体积概率分布及其空间守恒的模型。该模型的设计由DOPC分子动力学模拟指导和测试。该模型始终捕捉到电子和中子散射密度分布中发现的显著特征。分析的一个关键结果是分子表面积A。对于50℃的DPPC,A = 63.0 Ų,而对于30℃的DOPC,A = 67.4 Ų,估计不确定度为1 Ų。虽然DPPC的A值与最近仅通过X射线散射数据分析获得的报告值一致,但DOPC的A值几乎小10%。这种改进的确定脂质面积的方法有助于调和从单独的X射线和中子散射实验获得的脂质面积值的长期差异,并对分子动力学模拟提出了新的挑战。

相似文献

7
Kinetics for the subgel phase formation in DPPC/DOPC mixed bilayers.在 DPPC/DOPC 混合双层中亚凝胶相形成的动力学。
Chem Phys Lipids. 2010 Sep;163(7):712-9. doi: 10.1016/j.chemphyslip.2010.06.007. Epub 2010 Jul 1.

引用本文的文献

6
Cyclization of Two Antimicrobial Peptides Improves Their Activity.两种抗菌肽的环化作用提高了它们的活性。
ACS Omega. 2025 Feb 26;10(9):9728-9740. doi: 10.1021/acsomega.4c11466. eCollection 2025 Mar 11.
9
10
Neutron spin echo shows pHLIP is capable of retarding membrane thickness fluctuations.中子自旋回波实验表明 pHLIP 能够减缓膜厚度波动。
Biochim Biophys Acta Biomembr. 2024 Oct;1866(7):184349. doi: 10.1016/j.bbamem.2024.184349. Epub 2024 May 28.

本文引用的文献

6
Partial molecular volumes of lipids and cholesterol.脂质和胆固醇的部分分子体积
Chem Phys Lipids. 2006 Sep;143(1-2):1-10. doi: 10.1016/j.chemphyslip.2006.04.002. Epub 2006 Apr 28.
10
Simulation-based methods for interpreting x-ray data from lipid bilayers.基于模拟的脂质双层X射线数据解读方法。
Biophys J. 2006 Apr 15;90(8):2796-807. doi: 10.1529/biophysj.105.075697. Epub 2006 Jan 27.

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验