Kucerka Norbert, Nagle John F, Sachs Jonathan N, Feller Scott E, Pencer Jeremy, Jackson Andrew, Katsaras John
Canadian Neutron Beam Centre, National Research Council, Chalk River, Ontario K0J 1J0, Canada.
Biophys J. 2008 Sep;95(5):2356-67. doi: 10.1529/biophysj.108.132662. Epub 2008 May 23.
Quantitative structures were obtained for the fully hydrated fluid phases of dioleoylphosphatidylcholine (DOPC) and dipalmitoylphosphatidylcholine (DPPC) bilayers by simultaneously analyzing x-ray and neutron scattering data. The neutron data for DOPC included two solvent contrasts, 50% and 100% D(2)O. For DPPC, additional contrast data were obtained with deuterated analogs DPPC_d62, DPPC_d13, and DPPC_d9. For the analysis, we developed a model that is based on volume probability distributions and their spatial conservation. The model's design was guided and tested by a DOPC molecular dynamics simulation. The model consistently captures the salient features found in both electron and neutron scattering density profiles. A key result of the analysis is the molecular surface area, A. For DPPC at 50 degrees C A = 63.0 A(2), whereas for DOPC at 30 degrees C A = 67.4 A(2), with estimated uncertainties of 1 A(2). Although A for DPPC agrees with a recently reported value obtained solely from the analysis of x-ray scattering data, A for DOPC is almost 10% smaller. This improved method for determining lipid areas helps to reconcile long-standing differences in the values of lipid areas obtained from stand-alone x-ray and neutron scattering experiments and poses new challenges for molecular dynamics simulations.
通过同时分析X射线和中子散射数据,获得了二油酰磷脂酰胆碱(DOPC)和二棕榈酰磷脂酰胆碱(DPPC)双层完全水合流体相的定量结构。DOPC的中子数据包括两种溶剂对比度,50%和100% D₂O。对于DPPC,使用氘代类似物DPPC_d62、DPPC_d13和DPPC_d9获得了额外的对比度数据。为了进行分析,我们开发了一个基于体积概率分布及其空间守恒的模型。该模型的设计由DOPC分子动力学模拟指导和测试。该模型始终捕捉到电子和中子散射密度分布中发现的显著特征。分析的一个关键结果是分子表面积A。对于50℃的DPPC,A = 63.0 Ų,而对于30℃的DOPC,A = 67.4 Ų,估计不确定度为1 Ų。虽然DPPC的A值与最近仅通过X射线散射数据分析获得的报告值一致,但DOPC的A值几乎小10%。这种改进的确定脂质面积的方法有助于调和从单独的X射线和中子散射实验获得的脂质面积值的长期差异,并对分子动力学模拟提出了新的挑战。