Derelle Evelyne, Ferraz Conchita, Escande Marie-Line, Eychenié Sophie, Cooke Richard, Piganeau Gwenaël, Desdevises Yves, Bellec Laure, Moreau Hervé, Grimsley Nigel
Université Pierre et Marie Curie-Paris 06, Laboratoire Arago, Banyuls-sur-Mer, France.
PLoS One. 2008 May 28;3(5):e2250. doi: 10.1371/journal.pone.0002250.
Large DNA viruses are ubiquitous, infecting diverse organisms ranging from algae to man, and have probably evolved from an ancient common ancestor. In aquatic environments, such algal viruses control blooms and shape the evolution of biodiversity in phytoplankton, but little is known about their biological functions. We show that Ostreococcus tauri, the smallest known marine photosynthetic eukaryote, whose genome is completely characterized, is a host for large DNA viruses, and present an analysis of the life-cycle and 186,234 bp long linear genome of OtV5. OtV5 is a lytic phycodnavirus which unexpectedly does not degrade its host chromosomes before the host cell bursts. Analysis of its complete genome sequence confirmed that it lacks expected site-specific endonucleases, and revealed the presence of 16 genes whose predicted functions are novel to this group of viruses. OtV5 carries at least one predicted gene whose protein closely resembles its host counterpart and several other host-like sequences, suggesting that horizontal gene transfers between host and viral genomes may occur frequently on an evolutionary scale. Fifty seven percent of the 268 predicted proteins present no similarities with any known protein in Genbank, underlining the wealth of undiscovered biological diversity present in oceanic viruses, which are estimated to harbour 200Mt of carbon.
大型DNA病毒广泛存在,感染从藻类到人类等各种生物,可能起源于一个古老的共同祖先。在水生环境中,这类藻类病毒控制水华并影响浮游植物生物多样性的进化,但人们对它们的生物学功能知之甚少。我们发现,已知最小的海洋光合真核生物——莱茵衣藻(Ostreococcus tauri),其基因组已完全测序,是大型DNA病毒的宿主,并对OtV5的生命周期和186,234碱基对长的线性基因组进行了分析。OtV5是一种裂解性藻DNA病毒,出人意料的是,它在宿主细胞破裂前不会降解宿主染色体。对其完整基因组序列的分析证实它缺乏预期的位点特异性内切酶,并揭示了16个基因的存在,其预测功能在这类病毒中是全新的。OtV5携带至少一个预测基因,其蛋白质与宿主对应物非常相似,还有其他几个类似宿主的序列,这表明在进化过程中宿主和病毒基因组之间可能频繁发生水平基因转移。在268个预测蛋白中,57%与Genbank中任何已知蛋白都没有相似性,这凸显了海洋病毒中存在大量未被发现的生物多样性,据估计海洋病毒含有200亿吨碳。