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公海和沉积物中不同纬度表层海水中浮霉菌门的多样性模式。

Different Planctomycetes diversity patterns in latitudinal surface seawater of the open sea and in sediment.

作者信息

Shu Qinglong, Jiao Nianzhi

机构信息

State Key Laboratory of Marine Environmental Science, Xiamen University, Xiamen, 361005, P R China.

出版信息

J Microbiol. 2008 Apr;46(2):154-9. doi: 10.1007/s12275-008-0002-9. Epub 2008 Jun 11.

Abstract

The 16S rRNA gene approach was applied to investigate the diversity of Planctomycetes in latitudinal surface seawater of the Western Pacific Ocean. The results revealed that the Pirellula-Rhodopirellula-Blastopirellula clade dominated the Planctomycetes community at all surface seawater sites while the minority genera Gemmata and Planctomyces were only found at sites H5 and H2 respectively. Although the clone frequency of the PRB clade seemed stable (between 83.3% and 94.1%) for all surface seawater sites, the retrieved Pirellula-Rhodopirellula-Blastopirellula clade presented unexpected diversity. Interestingly, low latitude seawater appeared to have higher diversity than mid-latitudes. integral-LIBSHUFF software analysis revealed significantly different diversity patterns between in latitudinal surface seawater and in the sediment of South China Sea station M2896. Our data suggested that different hydrological and geographic features contributed to the shift of Planctomycetes diversity in marine environments. This is, to our knowledge, the first systematic assessment of Planctomycetes in latitudinal surface seawater of the open sea and the first comparison of diversity pattern between surface seawater and sediments and has broadened our understanding of Planctomycetes diversity in marine environments.

摘要

采用16S rRNA基因方法研究西太平洋纬度表层海水中浮霉菌门的多样性。结果表明,在所有表层海水站点中,皮氏菌-红皮氏菌-芽皮氏菌进化枝在浮霉菌门群落中占主导地位,而少数属类,即出芽菌属和浮霉菌属,分别仅在H5和H2站点被发现。尽管PRB进化枝的克隆频率在所有表层海水站点似乎较为稳定(在83.3%至94.1%之间),但所检索到的皮氏菌-红皮氏菌-芽皮氏菌进化枝呈现出意想不到的多样性。有趣的是,低纬度海水的多样性似乎高于中纬度。integral-LIBSHUFF软件分析显示,南海M2896站的纬度表层海水和沉积物中的多样性模式存在显著差异。我们的数据表明,不同的水文和地理特征导致了海洋环境中浮霉菌门多样性的变化。据我们所知,这是首次对公海纬度表层海水中的浮霉菌门进行系统评估,也是首次比较表层海水和沉积物之间的多样性模式,拓宽了我们对海洋环境中浮霉菌门多样性的理解。

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