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铁氧化物结核中浮霉菌的多样性研究——来自北极中洋脊(AMOR)和深海铁氧化物结核中新浮霉属(Bythopirellula)的描述:goksoyri 种,新属,新种,一种新型浮霉菌。

Diversity of Planctomycetes in iron-hydroxide deposits from the Arctic Mid Ocean Ridge (AMOR) and description of Bythopirellula goksoyri gen. nov., sp. nov., a novel Planctomycete from deep sea iron-hydroxide deposits.

机构信息

Department of Biology and Center for Geobiology, University of Bergen, Thormøhlensgate 53B, Postbox 7803, 5020, Bergen, Norway.

出版信息

Antonie Van Leeuwenhoek. 2013 Oct;104(4):569-84. doi: 10.1007/s10482-013-0019-x. Epub 2013 Sep 11.

DOI:10.1007/s10482-013-0019-x
PMID:24018702
Abstract

Planctomycetes form a deep branching and distinct phylum of the domain Bacteria, and represent a fascinating group due to their unusual features such as intracellular compartmentalization and lack of peptidoglycan in their cell walls. The phylum Planctomycetes was described already in 1924, but still the diversity of this phylum represents an enigma and unexploited resource. In this study the diversity of the phylum Planctomycetes in low temperature iron-hydroxide deposits at the Mohns Ridge, a part of the Arctic Mid Ocean Ridge (AMOR), was characterised by descriptive analysis of 16S rRNA gene sequences in combination with isolation of planctomycetes strains. The 16S rRNA gene sequences were affiliated with three order within the phylum Planctomycetes namely the (i)Planctomycetales, (ii) "Candidatus Brocadiales" and (iii) Phycisphaerae in addition to sequences affiliating to hitherto unknown Planctomycetes. The majority of the sequences were affiliated with the CCM11a group (Phycisphaerae), and with the Pir4 group (Planctomycetaceae). Two strains from the order Planctomycetales were isolated. One strain (Plm2) showed high similarity to the previously isolated Planctomyces maris (99 % 16S rRNA sequence identity). The other strain (Pr1d) belonged to the Pir4 group, and showed highest identity with Rhodopirellula baltica (86 %), Blastopirellula marina (86 %) and Pirellula staleyi (85 %). Based on its physiological and biochemical properties, strain Pr1d(T) is considered to represent a new genus of the order Planctomycetales. We propose to classify the novel planctomycete in a new genus and species, Bythoypirellula goksoyri gen. nov., sp. nov., the type strain being Pr1d(T).

摘要

厚壁菌门形成了细菌域的一个深分支和独特的门,由于其独特的特征,如细胞内区室化和细胞壁缺乏肽聚糖,因此代表了一个引人入胜的群体。厚壁菌门早在 1924 年就被描述过,但该门的多样性仍然是一个谜和未开发的资源。在这项研究中,通过描述性分析 16S rRNA 基因序列并结合分离的平板菌属菌株,研究了北极中洋脊(AMOR)Mohns 脊低温铁氢氧化物沉积物中厚壁菌门的多样性。16S rRNA 基因序列与厚壁菌门的三个目有关,即(i)平板菌目,(ii)“Candidatus Brocadiales”和(iii)Phycisphaerae,此外还有与迄今为止未知的平板菌属相关的序列。大多数序列与 CCM11a 组(Phycisphaerae)和 Pir4 组(Planctomycetaceae)有关。从平板菌目分离出两个菌株。一个菌株(Plm2)与先前分离的 Planctomyces maris 具有高度相似性(99%的 16S rRNA 序列同一性)。另一个菌株(Pr1d)属于 Pir4 组,与 Rhodopirellula baltica(86%)、Blastopirellula marina(86%)和 Pirellula staleyi(85%)的相似度最高。基于其生理生化特性,菌株 Pr1d(T)被认为代表了平板菌目的一个新属。我们建议将新型平板菌分类为一个新属和新种,即 Bythoypirellula goksoyri gen. nov.,sp. nov.,其模式菌株为 Pr1d(T)。

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