Suppr超能文献

ForSim:一种用于探索具有可控真值的复杂性状遗传结构的工具。

ForSim: a tool for exploring the genetic architecture of complex traits with controlled truth.

作者信息

Lambert Brian W, Terwilliger Joseph D, Weiss Kenneth M

机构信息

Department of Anthropology, Penn State University, University Park, PA, USA.

出版信息

Bioinformatics. 2008 Aug 15;24(16):1821-2. doi: 10.1093/bioinformatics/btn317. Epub 2008 Jun 19.

Abstract

UNLABELLED

Many important problems in biology involve complex traits affected by multiple coding or regulatory parts of the genome. How well the underlying genetic architecture can be inferred by statistical methods such as mapping and association studies are active research areas. ForSim is a flexible forward evolutionary simulation tool for exploring the consequences of evolution by phenotype, whereby demographic, chance, behavioral and selective effects mold genetic architecture. Simulation is useful for exploring these issues as well as the choice of study design inferential methods.

SUPPLEMENTARY INFORMATION

Supplementary data are available at Bioinformatics online.

摘要

未标注

生物学中的许多重要问题涉及受基因组多个编码或调控部分影响的复杂性状。通过诸如定位和关联研究等统计方法能在多大程度上推断出潜在的遗传结构是活跃的研究领域。ForSim是一种灵活的正向进化模拟工具,用于通过表型探索进化的后果,其中人口统计学、偶然性、行为和选择效应塑造了遗传结构。模拟对于探索这些问题以及研究设计推断方法的选择很有用。

补充信息

补充数据可在《生物信息学》在线获取。

相似文献

1
ForSim: a tool for exploring the genetic architecture of complex traits with controlled truth.
Bioinformatics. 2008 Aug 15;24(16):1821-2. doi: 10.1093/bioinformatics/btn317. Epub 2008 Jun 19.
2
quantiNemo: an individual-based program to simulate quantitative traits with explicit genetic architecture in a dynamic metapopulation.
Bioinformatics. 2008 Jul 1;24(13):1552-3. doi: 10.1093/bioinformatics/btn219. Epub 2008 May 1.
3
Mixture generalized linear models for multiple interval mapping of quantitative trait Loci in experimental crosses.
Biometrics. 2009 Jun;65(2):470-7. doi: 10.1111/j.1541-0420.2008.01100.x. Epub 2008 Jul 18.
5
MVQTLCIM: composite interval mapping of multivariate traits in a hybrid F population of outbred species.
BMC Bioinformatics. 2017 Nov 23;18(1):515. doi: 10.1186/s12859-017-1908-1.
6
Mapping QTL for agronomic traits in breeding populations.
Theor Appl Genet. 2012 Jul;125(2):201-10. doi: 10.1007/s00122-012-1887-6. Epub 2012 May 22.
7
A powerful and flexible multilocus association test for quantitative traits.
Am J Hum Genet. 2008 Feb;82(2):386-97. doi: 10.1016/j.ajhg.2007.10.010.
9
Nemo: an evolutionary and population genetics programming framework.
Bioinformatics. 2006 Oct 15;22(20):2556-7. doi: 10.1093/bioinformatics/btl415. Epub 2006 Jul 31.

引用本文的文献

1
Theoretical Evaluation of Multi-Breed Genomic Prediction in Chinese Indigenous Cattle.
Animals (Basel). 2019 Oct 11;9(10):789. doi: 10.3390/ani9100789.
4
Simulating variance heterogeneity in quantitative genome wide association studies.
BMC Bioinformatics. 2018 Mar 21;19(Suppl 3):72. doi: 10.1186/s12859-018-2061-1.
5
Simulating autosomal genotypes with realistic linkage disequilibrium and a spiked-in genetic effect.
BMC Bioinformatics. 2018 Jan 2;19(1):2. doi: 10.1186/s12859-017-2004-2.
6
cophesim: a comprehensive phenotype simulator for testing novel association methods.
F1000Res. 2017 Aug 1;6:1294. doi: 10.12688/f1000research.11968.1. eCollection 2017.
7
A rare-variant test for high-dimensional data.
Eur J Hum Genet. 2017 Aug;25(8):988-994. doi: 10.1038/ejhg.2017.90. Epub 2017 May 24.
8
GeneEvolve: a fast and memory efficient forward-time simulator of realistic whole-genome sequence and SNP data.
Bioinformatics. 2017 Jan 15;33(2):294-296. doi: 10.1093/bioinformatics/btw606. Epub 2016 Sep 21.
9
The genetic architecture of type 2 diabetes.
Nature. 2016 Aug 4;536(7614):41-47. doi: 10.1038/nature18642. Epub 2016 Jul 11.
10
DHOEM: a statistical simulation software for simulating new markers in real SNP marker data.
BMC Bioinformatics. 2015 Dec 3;16:404. doi: 10.1186/s12859-015-0830-7.

本文引用的文献

1
Sequence-level population simulations over large genomic regions.
Genetics. 2007 Nov;177(3):1725-31. doi: 10.1534/genetics.106.069088. Epub 2007 Oct 18.
2
Forward-time simulations of human populations with complex diseases.
PLoS Genet. 2007 Mar 23;3(3):e47. doi: 10.1371/journal.pgen.0030047. Epub 2007 Feb 15.
3
The coalescent process in models with selection and recombination.
Genetics. 1988 Nov;120(3):831-40. doi: 10.1093/genetics/120.3.831.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验