Gorfe Alemayehu A, Baron Riccardo, McCammon J Andrew
Department of Chemistry and Biochemistry and Center for Theoretical Biological Physics, University of California at San Diego, La Jolla, California 92093-0365, USA.
Biophys J. 2008 Oct;95(7):3269-77. doi: 10.1529/biophysj.108.136481. Epub 2008 Jul 11.
To shed light on the driving force for the hydrophobic effect that partitions amphiphilic lipoproteins between water and membrane, we carried out an atomically detailed thermodynamic analysis of a triply lipid modified H-ras heptapeptide anchor (ANCH) in water and in a DMPC (1,2-dimyristoyl-sn-glycero-3-phosphocholine) bilayer. Combining molecular mechanical and continuum solvent approaches with an improved technique for solute entropy calculation, we obtained an overall transfer free energy of approximately -13 kcal mol(-1). This value is in qualitative agreement with free energy changes derived from a potential of mean force calculation and indirect experimental observations. Changes in free energies of solvation and ANCH conformational reorganization are unfavorable, whereas ANCH-DMPC interactions-especially van der Waals-favor insertion. These results are consistent with an enthalpy-driven hydrophobic effect, in accord with earlier calorimetric data on the membrane partition of other amphiphiles. Furthermore, structural and entropic analysis of molecular dynamics-generated ensembles suggests that conformational selection may play a hitherto unappreciated role in membrane insertion of lipid-modified peptides and proteins.
为了阐明两亲性脂蛋白在水和膜之间分配的疏水作用的驱动力,我们对一种三重脂质修饰的H-ras七肽锚定物(ANCH)在水和二肉豆蔻酰磷脂酰胆碱(DMPC,1,2-二肉豆蔻酰-sn-甘油-3-磷酸胆碱)双层膜中进行了原子水平的详细热力学分析。我们将分子力学和连续介质溶剂方法与一种改进的溶质熵计算技术相结合,得到了约-13 kcal mol⁻¹的总转移自由能。该值与从平均力势计算和间接实验观察得出的自由能变化在定性上一致。溶剂化自由能和ANCH构象重组的变化是不利的,而ANCH-DMPC相互作用——特别是范德华力——有利于插入。这些结果与焓驱动的疏水作用一致,这与早期关于其他两亲物膜分配的量热数据相符。此外,对分子动力学生成的系综的结构和熵分析表明,构象选择可能在脂质修饰的肽和蛋白质的膜插入中起着迄今未被认识到的作用。