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溶组织内阿米巴L-蛋氨酸γ-裂合酶1的结晶及初步X射线分析

Crystallization and preliminary X-ray analysis of L-methionine gamma-lyase 1 from Entamoeba histolytica.

作者信息

Sato Dan, Karaki Tsuyoshi, Shimizu Akira, Kamei Kaeko, Harada Shigeharu, Nozaki Tomoyoshi

机构信息

Institute for Advanced Biosciences, Keio University, 246-2 Mizukami, Kakuganji, Tsuruoka, Yamagata 997-0052, Japan.

出版信息

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2008 Aug 1;64(Pt 8):697-9. doi: 10.1107/S1744309108018691. Epub 2008 Jul 5.

DOI:10.1107/S1744309108018691
PMID:18678935
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC2494978/
Abstract

L-Methionine gamma-lyase (MGL) is a pyridoxal phosphate-dependent enzyme that is involved in the degradation of sulfur-containing amino acids. MGL is an attractive drug target against amoebiasis because the mammalian host of its causative agent Entamoeba histolytica lacks MGL. For the development of anti-amoebic agents based on the structure of MGL, one of two MGL isoenzymes (EhMGL1) was crystallized in the monoclinic space group P2(1), with unit-cell parameters a = 99.12, b = 85.38, c = 115.37 A, beta = 101.82 degrees . The crystals diffract to beyond 2.0 A resolution. The presence of a tetramer in the asymmetric unit (4 x 42.4 kDa) gives a Matthews coefficient of 2.8 A(3) Da(-1) and a solvent content of 56%. The structure was solved by the molecular-replacement method and structure refinement is now in progress.

摘要

L-蛋氨酸γ-裂合酶(MGL)是一种依赖磷酸吡哆醛的酶,参与含硫氨基酸的降解。MGL是抗阿米巴病的一个有吸引力的药物靶点,因为其病原体溶组织内阿米巴的哺乳动物宿主缺乏MGL。为了基于MGL的结构开发抗阿米巴药物,两种MGL同工酶之一(EhMGL1)在单斜空间群P2(1)中结晶,晶胞参数为a = 99.12、b = 85.38、c = 115.37 Å,β = 101.82°。这些晶体的衍射分辨率超过2.0 Å。不对称单元中存在四聚体(4×42.4 kDa),马修斯系数为2.8 ų Da⁻¹,溶剂含量为56%。该结构通过分子置换法解析,目前正在进行结构精修。

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本文引用的文献

1
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Methods Enzymol. 1997;276:307-26. doi: 10.1016/S0076-6879(97)76066-X.
2
High-resolution structure of methionine gamma-lyase from Citrobacter freundii.弗氏柠檬酸杆菌甲硫氨酸γ-裂合酶的高分辨率结构
Acta Crystallogr D Biol Crystallogr. 2008 Feb;64(Pt 2):211-8. doi: 10.1107/S0907444907065390. Epub 2008 Jan 16.
3
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4
Current therapeutics, their problems, and sulfur-containing-amino-acid metabolism as a novel target against infections by "amitochondriate" protozoan parasites.当前的治疗方法、它们存在的问题,以及含硫氨基酸代谢作为针对“无线粒体”原生动物寄生虫感染的新靶点。
Clin Microbiol Rev. 2007 Jan;20(1):164-87. doi: 10.1128/CMR.00019-06.
5
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Plant Cell Physiol. 2007 Feb;48(2):232-42. doi: 10.1093/pcp/pcl055. Epub 2006 Dec 13.
6
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7
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9
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