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1
The replication termination signal terB of the Escherichia coli chromosome is a deletion hot spot.大肠杆菌染色体的复制终止信号terB是一个缺失热点。
EMBO J. 1991 Sep;10(9):2699-705. doi: 10.1002/j.1460-2075.1991.tb07814.x.
2
Flanking sequences affect replication arrest at the Escherichia coli terminator TerB in vivo.侧翼序列在体内影响大肠杆菌终止子TerB处的复制停滞。
J Bacteriol. 1994 Jul;176(13):4165-7. doi: 10.1128/jb.176.13.4165-4167.1994.
3
The Escherichia coli terB sequence affects maintenance of a plasmid with the M13 phage replication origin.大肠杆菌terB序列影响带有M13噬菌体复制起点的质粒的维持。
J Bacteriol. 1991 Dec;173(23):7695-7. doi: 10.1128/jb.173.23.7695-7697.1991.
4
Polar arrest of the simian virus 40 tumor antigen-mediated replication fork movement in vitro by the tus protein-terB complex of Escherichia coli.大肠杆菌的tus蛋白-terB复合物在体外对猿猴病毒40肿瘤抗原介导的复制叉移动的极性抑制。
J Biol Chem. 1992 Sep 15;267(26):18612-22.
5
Equilibrium, kinetic, and footprinting studies of the Tus-Ter protein-DNA interaction.Tus-Ter蛋白与DNA相互作用的平衡、动力学及足迹分析研究。
J Biol Chem. 1992 Apr 15;267(11):7434-43.
6
DNA transcription and repressor binding affect deletion formation in Escherichia coli plasmids.DNA转录和阻遏物结合影响大肠杆菌质粒中的缺失形成。
EMBO J. 1992 Oct;11(10):3629-34. doi: 10.1002/j.1460-2075.1992.tb05447.x.
7
The DNA replication fork blocked at the Ter site may be an entrance for the RecBCD enzyme into duplex DNA.在Ter位点受阻的DNA复制叉可能是RecBCD酶进入双链DNA的入口。
J Bacteriol. 1994 Aug;176(15):4656-63. doi: 10.1128/jb.176.15.4656-4663.1994.
8
The tus gene of Escherichia coli: autoregulation, analysis of flanking sequences and identification of a complementary system in Salmonella typhimurium.大肠杆菌的tus基因:自动调节、侧翼序列分析及鼠伤寒沙门氏菌中互补系统的鉴定。
Res Microbiol. 1991 Feb-Apr;142(2-3):169-75. doi: 10.1016/0923-2508(91)90026-7.
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Illegitimate recombination occurs between the replication origin of the plasmid pC194 and a progressing replication fork.非法重组发生在质粒pC194的复制起点与正在推进的复制叉之间。
EMBO J. 1986 Dec 20;5(13):3691-6. doi: 10.1002/j.1460-2075.1986.tb04701.x.
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Escherichia coli Tus protein acts to arrest the progression of DNA replication forks in vitro.大肠杆菌Tus蛋白在体外可阻止DNA复制叉的前进。
Proc Natl Acad Sci U S A. 1990 Apr;87(7):2481-5. doi: 10.1073/pnas.87.7.2481.

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The Symmetrical Wave Pattern of Base-Pair Substitution Rates across the Escherichia coli Chromosome Has Multiple Causes.碱基对替换率在大肠杆菌染色体上呈现对称波状模式有多种原因。
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Investigation of Pseudomonas aeruginosa strain PcyII-10 variants resisting infection by N4-like phage Ab09 in search for genes involved in phage adsorption.研究抗 N4 样噬菌体 Ab09 感染的铜绿假单胞菌 PcyII-10 变异株,寻找参与噬菌体吸附的基因。
PLoS One. 2019 Apr 16;14(4):e0215456. doi: 10.1371/journal.pone.0215456. eCollection 2019.
3
Replication Fork Breakage and Restart in Escherichia coli.大肠杆菌中复制叉的断裂与重连。
Microbiol Mol Biol Rev. 2018 Jun 13;82(3). doi: 10.1128/MMBR.00013-18. Print 2018 Sep.
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Recombination and replication.重组与复制。
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Replication slippage of the thermophilic DNA polymerases B and D from the Euryarchaeota Pyrococcus abyssi.嗜热古菌 Pyrococcus abyssi 的 B 和 D 型 DNA 聚合酶的复制滑动。
Front Microbiol. 2014 Aug 7;5:403. doi: 10.3389/fmicb.2014.00403. eCollection 2014.
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Replication of the Escherichia coli chromosome in RNase HI-deficient cells: multiple initiation regions and fork dynamics.大肠杆菌染色体在核糖核酸酶 HI 缺陷型细胞中的复制:多个起始区域和叉动态变化
Mol Microbiol. 2014 Jan;91(1):39-56. doi: 10.1111/mmi.12440. Epub 2013 Nov 15.
7
Replication fork barriers: pausing for a break or stalling for time?复制叉障碍:暂停休息还是因时而停滞?
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Replication fork stalling at natural impediments.复制叉在天然障碍处停滞。
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9
Replication fork blockage by transcription factor-DNA complexes in Escherichia coli.大肠杆菌中转录因子 - DNA 复合物导致的复制叉阻滞
Nucleic Acids Res. 2006;34(18):5194-202. doi: 10.1093/nar/gkl682. Epub 2006 Sep 25.
10
UvrD helicase suppresses recombination and DNA damage-induced deletions.UvrD解旋酶可抑制重组及DNA损伤诱导的缺失。
J Bacteriol. 2006 Aug;188(15):5450-9. doi: 10.1128/JB.00275-06.

本文引用的文献

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Nucleotide sequence and functional map of pC194, a plasmid that specifies inducible chloramphenicol resistance.pC194质粒的核苷酸序列及功能图谱,该质粒可产生诱导型氯霉素抗性。
J Bacteriol. 1982 May;150(2):815-25. doi: 10.1128/jb.150.2.815-825.1982.
2
The nucleotide sequence surrounding the replication terminus of R6K.R6K复制终点周围的核苷酸序列。
Proc Natl Acad Sci U S A. 1981 Apr;78(4):2095-9. doi: 10.1073/pnas.78.4.2095.
3
Genetic recombination of bacterial plasmid DNA. Analysis of the effect of recombination-deficient mutations on plasmid recombination.细菌质粒DNA的基因重组。重组缺陷突变对质粒重组影响的分析。
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The functional origin of bacteriophage f1 DNA replication. Its signals and domains.噬菌体f1 DNA复制的功能起源。其信号与结构域。
J Mol Biol. 1984 Feb 5;172(4):507-21. doi: 10.1016/s0022-2836(84)80020-0.
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A conserved sequence at c-myc oncogene chromosomal translocation breakpoints in plasmacytomas.浆细胞瘤中c-myc癌基因染色体易位断点处的保守序列。
Nature. 1984;310(5975):327-30. doi: 10.1038/310327a0.
6
Site-specific pausing of deoxyribonucleic acid synthesis catalyzed by four forms of Escherichia coli DNA polymerase III.由四种形式的大肠杆菌DNA聚合酶III催化的脱氧核糖核酸合成的位点特异性暂停
Biochemistry. 1983 Oct 25;22(22):5177-88. doi: 10.1021/bi00291a018.
7
Tetracycline resistance determined by pBR322 is mediated by one polypeptide.由pBR322所决定的四环素抗性是由一种多肽介导的。
Gene. 1983 Dec;26(2-3):197-203. doi: 10.1016/0378-1119(83)90190-7.
8
Replication functions of pC194 are necessary for efficient plasmid transduction by M13 phage.pC194的复制功能对于M13噬菌体高效进行质粒转导是必需的。
EMBO J. 1984 Jan;3(1):81-6. doi: 10.1002/j.1460-2075.1984.tb01764.x.
9
Nucleotide sequence and functional map of pE194, a plasmid that specifies inducible resistance to macrolide, lincosamide, and streptogramin type B antibodies.pE194的核苷酸序列和功能图谱,pE194是一种质粒,可产生对大环内酯类、林可酰胺类和B型链阳菌素抗体的诱导抗性。
J Bacteriol. 1982 May;150(2):804-14. doi: 10.1128/jb.150.2.804-814.1982.
10
In vitro study of illegitimate recombination: involvement of DNA gyrase.非法重组的体外研究:DNA 回旋酶的作用
Cold Spring Harb Symp Quant Biol. 1981;45 Pt 1:399-408. doi: 10.1101/sqb.1981.045.01.054.

大肠杆菌染色体的复制终止信号terB是一个缺失热点。

The replication termination signal terB of the Escherichia coli chromosome is a deletion hot spot.

作者信息

Bierne H, Ehrlich S D, Michel B

机构信息

Laboratoire de Génétique Microbienne, Institut National de la Recherche Agronomique, Jouy en Josas, France.

出版信息

EMBO J. 1991 Sep;10(9):2699-705. doi: 10.1002/j.1460-2075.1991.tb07814.x.

DOI:10.1002/j.1460-2075.1991.tb07814.x
PMID:1868840
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC452973/
Abstract

Hybrids composed of phage M13, plasmid pBR322 and the termination signal of Escherichia coli chromosome replication terB were used to show that arrest of DNA synthesis creates a very efficient deletion hot spot. Up to 80% of deletions occurring in these hybrids had one deletion end-point at terB provided that (i) terB was oriented to arrest M13 and pBR322 leading strand synthesis; and (ii) the host cells contained the Tus protein necessary for arresting DNA synthesis at terB. The position of terB and the flanking sequences had little effect on deletion hot spot activity. About 90% of the deletions at terB ended 5-6 nucleotides in front of the major replication arrest site. We propose two models to account for deletion formation and speculate that many genome rearrangements may be due to the pausing of DNA replication.

摘要

由噬菌体M13、质粒pBR322和大肠杆菌染色体复制终止信号terB组成的杂种用于表明DNA合成的停滞产生了一个非常有效的缺失热点。只要(i)terB的方向是阻止M13和pBR322前导链的合成;以及(ii)宿主细胞含有在terB处阻止DNA合成所需的Tus蛋白,这些杂种中发生的缺失有高达80%在terB处有一个缺失端点。terB的位置和侧翼序列对缺失热点活性影响很小。terB处约90%的缺失在主要复制停滞位点前5-6个核苷酸处结束。我们提出了两个模型来解释缺失的形成,并推测许多基因组重排可能是由于DNA复制的暂停。