Brody Thomas, Yavatkar Amarendra S, Lin Yong, Ross Jermaine, Kuzin Alexander, Kundu Mukta, Fann Yang, Odenwald Ward F
The Neural Cell-Fate Determinants Section, National Institutes of Health (NIH), Bethesda, Maryland, USA.
PLoS One. 2008 Aug 27;3(8):e3074. doi: 10.1371/journal.pone.0003074.
Acquisition of virulence factors and antibiotic resistance by many clinically important bacteria can be traced to horizontal gene transfer (HGT) between related or evolutionarily distant microflora. Comparative genomic analysis has become an important tool for identifying HGT DNA in emerging pathogens. We have adapted the multi-genome alignment tool EvoPrinter to facilitate discovery of HGT DNA sequences within bacterial genomes and within their mobile genetic elements.
EvoPrinter analysis of 13 different Staphylococcus aureus genomes revealed that one of the human isolates, the hospital epidemic methicillin-resistant MRSA252 strain, uniquely shares multiple putative HGT DNA sequences with different causative agents of bovine mastitis that are not found in the other human S. aureus isolates. MRSA252 shares over 14 different DNA sequence blocks with the bovine mastitis ET3 S. aureus strain RF122, and many of the HGT DNAs encode virulence factors. EvoPrinter analysis of the MRSA252 chromosome also uncovered virulence-factor encoding HGT events with the genome of Listeria monocytogenes and a Staphylococcus saprophyticus associated plasmid. Both bacteria are also causal agents of contagious bovine mastitis.
EvoPrinter analysis reveals that the human MRSA252 strain uniquely shares multiple DNA sequence blocks with different causative agents of bovine mastitis, suggesting that HGT events may be occurring between these pathogens. These findings have important implications with regard to animal husbandry practices that inadvertently enhance the contact of human and livestock bacterial pathogens.
许多临床上重要的细菌获得毒力因子和抗生素耐药性可追溯到相关或进化上距离遥远的微生物群落之间的水平基因转移(HGT)。比较基因组分析已成为识别新出现病原体中HGT DNA的重要工具。我们改进了多基因组比对工具EvoPrinter,以促进在细菌基因组及其移动遗传元件中发现HGT DNA序列。
对13种不同的金黄色葡萄球菌基因组进行EvoPrinter分析发现, 其中一株人类分离株,即医院流行的耐甲氧西林MRSA252菌株,与其他人类金黄色葡萄球菌分离株中未发现的不同牛乳腺炎病原体独特地共享多个推定的HGT DNA序列。MRSA252与牛乳腺炎ET-3金黄色葡萄球菌菌株RF122共享超过14个不同的DNA序列块,并且许多HGT DNA编码毒力因子。对MRSA252染色体的EvoPrinter分析还发现了与单核细胞增生李斯特菌基因组和腐生葡萄球菌相关质粒的编码毒力因子的HGT事件。这两种细菌也是传染性牛乳腺炎的病原体。
EvoPrinter分析表明,人类MRSA252菌株与不同的牛乳腺炎病原体独特地共享多个DNA序列块,这表明这些病原体之间可能正在发生HGT事件。这些发现对于无意中增加人类和家畜细菌病原体接触的畜牧实践具有重要意义。