Groysman Stanislav, Wang Jun-Jieh, Tagore Ranitendranath, Lee Sonny C, Holm R H
Department of Chemistry and Chemical Biology, Harvard University, Cambridge, Massachusetts 02138, USA.
J Am Chem Soc. 2008 Sep 24;130(38):12794-807. doi: 10.1021/ja804000k. Epub 2008 Sep 3.
Two series of square pyramidal (SP) monodithiolene complexes, [M (VI)O 3- n S n (bdt)] (2-) and their silylated derivatives [M (VI)O 2- n S n (OSiR 3)(bdt)] (-) ( n = 0, M = Mo or W; n = 1, 2, M = W), synthesized in this and previous work, constitute the basic molecules in a biomimetic approach to structural analogues of the oxidized sites in the xanthine oxidoreductase enzyme family. Benzene-1,2-dithiolate (bdt) simulates native pyranopterindithiolene chelation in the basal plane, tungsten instead of the native metal molybdenum was employed in sulfido complexes to avoid autoreduction, and silylation models protonation. The complexes [MO 3(bdt)] (2-) and [MO 2(OSiR 3)(bdt)] (-) represent inactive sites, while [MO 2S(bdt)] (2-) and [MOS(OSiR 3)(bdt)] (-), with basal sulfido and silyloxo ligands, are the first analogues of the catalytic sites. Also prepared were [MOS 2(bdt)] (2-) and [MS 2(OSiR 3)(bdt)] (-), with basal sulfido and silyloxo ligands. Complexes are described by angular parameters which reveal occasional distortions from idealized SP toward a trigonal bipyramidal (TBP) structure arising from crystal packing forces in crystalline Et 4N (+) salts. Miminized energy structures from DFT calculations are uniformly SP and reproduce experimental structures. For example, the correct structure is predicted for [WO 2S(bdt)] (2-), whose basal and apical sulfido diastereomers are potentially interconvertible through a low-lying TBP transition state for pseudorotation. The lowest energy tautomer of the protonated form is calculated to be [WOS(OH)(bdt)] (-), with basal sulfido and hydroxo ligands. Computational and experimental structures indicate that protein sites adopt intrinsic coordination geometries rather than those dictated by protein structure and environment.
在本研究及之前的工作中合成了两个系列的正方锥(SP)单二硫烯配合物,即M(VI)O₃₋ₙSₙ(bdt)及其硅烷基化衍生物M(VI)O₂₋ₙSₙ(OSiR₃)(bdt)(n = 0,M = Mo或W;n = 1,2,M = W),它们是一种仿生方法中用于构建黄嘌呤氧化还原酶家族氧化位点结构类似物的基本分子。苯-1,2-二硫醇盐(bdt)模拟了基面上天然的吡喃蝶呤二硫烯螯合作用,在硫代配合物中使用钨代替天然金属钼以避免自动还原,并且硅烷基化模拟质子化。配合物MO₃(bdt)和MO₂(OSiR₃)(bdt)代表无活性位点,而具有基面硫代和硅烷氧基配体的MO₂S(bdt)和MOS(OSiR₃)(bdt)是催化位点的首个类似物。还制备了具有基面硫代和硅烷氧基配体的MOS₂(bdt)和MS₂(OSiR₃)(bdt)。配合物通过角度参数来描述,这些参数揭示了在结晶的Et₄N⁺盐中由于晶体堆积力导致的偶尔从理想的SP结构向三角双锥(TBP)结构的扭曲。密度泛函理论(DFT)计算得到的最小能量结构均为SP结构,并重现了实验结构。例如,对于WO₂S(bdt)预测出了正确的结构,其基面和顶端硫代非对映异构体可能通过一个低位的用于假旋转的TBP过渡态相互转化。质子化形式的最低能量互变异构体经计算为WOS(OH)(bdt),具有基面硫代和羟基配体。计算和实验结构表明,蛋白质位点采用的是内在的配位几何结构,而非由蛋白质结构和环境所决定的结构。