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将海生红杆菌和芬氏红杆菌重新分类为滨海阿菲氏菌新属、新组合及芬氏阿菲氏菌新组合,光合异养α-变形菌纲的一个新属,并对红杆菌属、东方红杆菌和戈卡恩红杆菌进行修订描述

Reclassification of Rhodobium marinum and Rhodobium pfennigii as Afifella marina gen. nov. comb. nov. and Afifella pfennigii comb. nov., a new genus of photoheterotrophic Alphaproteobacteria and emended descriptions of Rhodobium, Rhodobium orientis and Rhodobium gokarnense.

作者信息

Urdiain Mercedes, López-López Arantxa, Gonzalo Cristina, Busse Hans-Jürgen, Langer Stefan, Kämpfer Peter, Rosselló-Móra Ramon

机构信息

Marine Microbiology Group, Institut Mediterrani d'Estudis Avançats (CSIC-UIB), C/Miquel Marqués 21, 07190 Esporles, Spain.

出版信息

Syst Appl Microbiol. 2008 Oct;31(5):339-51. doi: 10.1016/j.syapm.2008.07.002. Epub 2008 Sep 6.

DOI:10.1016/j.syapm.2008.07.002
PMID:18774253
Abstract

The isolation of photoheterotrophic organism C3 from a saline microbial mat led to its taxonomic characterization. Strain C3 could be identified as a member of the species Rhodobium marinum due to the genetic and phenotypic similarities to the type strain of the species (DSM 2698(T)). As a result of a taxonomic study, it was observed that the currently classified species of the genus formed two separate clades, each of them deserving genus status. Rhodobium orientis and Rhodobium gokarnense may be considered as true members of the genus Rhodobium, whereas R. marinum and Rhodobium pfennigii should be reclassified into a new genus. In the light of the genetic and phenotypic evidence observed, we propose that both latter species are reclassified within the new genus Afifella gen. nov., as species Afifella marina comb. nov., and Afifella pfennigii comb. nov., with Af. marina the type species of the genus. In addition, the taxonomic study has revealed that strain DSM 11549, identified as the type strain of the species Rhodopseudomonas julia, may represent a genomovar of Af. marina. The fact that the author of the first classification of R. julia indicates that the strains deposited in the German Collection for Microorganisms (DSM 11549) and American Collection of Type Cultures (ATCC 51105) do not correspond to the original description, makes the authenticity of the strains doubtful. Due to this reason, it is not proposed to reclassify the species.

摘要

从盐生微生物垫中分离出光异养生物C3后,对其进行了分类学鉴定。由于菌株C3与该物种的模式菌株(DSM 2698(T))在遗传和表型上具有相似性,因此可鉴定为海红杆菌(Rhodobium marinum)物种的成员。分类学研究结果表明,该属目前已分类的物种形成了两个独立的进化枝,每个进化枝都应有属的地位。东方红杆菌(Rhodobium orientis)和戈卡恩红杆菌(Rhodobium gokarnense)可被视为红杆菌属的真正成员,而海红杆菌和芬尼格红杆菌(Rhodobium pfennigii)应重新分类到一个新属中。根据观察到的遗传和表型证据,我们建议将后两个物种重新分类到新属阿菲拉菌属(Afifella gen. nov.)中,分别为海阿菲拉菌(Afifella marina comb. nov.)和芬尼格阿菲拉菌(Afifella pfennigii comb. nov.),其中海阿菲拉菌为该属的模式种。此外,分类学研究还表明,被鉴定为朱莉亚红假单胞菌(Rhodopseudomonas julia)模式菌株的DSM 11549菌株可能代表海阿菲拉菌的一个基因组变种。朱莉亚红假单胞菌首次分类的作者指出,保藏在德国微生物保藏中心(DSM 11549)和美国模式培养物保藏中心(ATCC 51105)的菌株与原始描述不符,这使得这些菌株的真实性存疑。因此,不建议对该物种进行重新分类。

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