Key Laboratory of Development and Application of Rural Renewable Energy, Biogas Institute of Ministry of Agriculture and Rural Affairs, Chengdu 610041, Sichuan Province, PR China.
Center for Anaerobic Microbial Resources of Sichuan Province, Chengdu 610041, PR China.
Int J Syst Evol Microbiol. 2024 Mar;74(3). doi: 10.1099/ijsem.0.006292.
A microaerophilic, Gram-negative, motile, and spiral-shaped bacterium, designated Y-M2, was isolated from oil sludge of Shengli oil field. The optimal growth condition of strain Y-M2 was at 25 °C, pH 7.0, and in the absence of NaCl. The major polar lipid was phosphatidylethanolamine. The main cellular fatty acid was iso-C 3-OH. It contained Q-9 and Q-10 as the predominant quinones. The DNA G+C content was 68.1 mol%. Strain Y-M2 showed the highest 16S rRNA gene sequence similarity to 26-4b (91.1 %). Phylogenetic analyses based on 16S rRNA gene and genomes showed that strain Y-M2 formed a distinct cluster in the order . Genomic analysis showed that Y-M2 possesses a complete nitrogen-fixation cluster which is phylogenetically close to that of methanogene. The cluster, encompassing the nitrogenase genes, was found in every N-fixing strain within the order . Phylogeny, phenotype, chemotaxonomy, and genomic results demonstrated that strain Y-M2 represents a novel species of a novel genus in a novel family fam. nov. in the order , for which the name gen. nov., sp. nov. was proposed. The type strain is Y-M2 (=CCAM 827=JCM 34765).
一株从胜利油田油泥中分离得到的兼性嗜氧、革兰氏阴性、运动、螺旋形的细菌,命名为 Y-M2。菌株 Y-M2 的最佳生长条件为 25℃、pH7.0、无 NaCl。主要极性脂为磷脂酰乙醇胺。主要细胞脂肪酸为 iso-C3-OH。主要醌为 Q-9 和 Q-10。其 DNA G+C 含量为 68.1mol%。菌株 Y-M2 与 26-4b 的 16S rRNA 基因序列相似度最高,为 91.1%。基于 16S rRNA 基因和基因组的系统发育分析表明,菌株 Y-M2 在 目中形成一个独特的聚类。基因组分析表明,Y-M2 具有一个完整的固氮簇,与产甲烷菌的固氮酶基因在系统发育上非常接近。固氮簇,包含固氮酶基因,存在于该目中的每一株固氮菌中。系统发育、表型、化学分类和基因组结果表明,菌株 Y-M2 代表了一个新属的新种,属于 目中的一个新科 fam. nov.,提议的学名是 gen. nov., sp. nov.。模式菌株为 Y-M2(=CCAM 827=JCM 34765)。