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与DsrC结合的普通脱硫弧菌异化亚硫酸盐还原酶的晶体结构为硫酸盐呼吸机制提供了新的见解。

The crystal structure of Desulfovibrio vulgaris dissimilatory sulfite reductase bound to DsrC provides novel insights into the mechanism of sulfate respiration.

作者信息

Oliveira Tânia F, Vonrhein Clemens, Matias Pedro M, Venceslau Sofia S, Pereira Inês A C, Archer Margarida

机构信息

Instituto de Tecnologia Química e Biológica, Universidade Nova de Lisboa (ITQB-UNL), Av. da República - EAN, 2780-157 Oeiras, Portugal.

出版信息

J Biol Chem. 2008 Dec 5;283(49):34141-9. doi: 10.1074/jbc.M805643200. Epub 2008 Sep 30.

Abstract

Sulfate reduction is one of the earliest types of energy metabolism used by ancestral organisms to sustain life. Despite extensive studies, many questions remain about the way respiratory sulfate reduction is associated with energy conservation. A crucial enzyme in this process is the dissimilatory sulfite reductase (dSiR), which contains a unique siroheme-[4Fe4S] coupled cofactor. Here, we report the structure of desulfoviridin from Desulfovibrio vulgaris, in which the dSiR DsrAB (sulfite reductase) subunits are bound to the DsrC protein. The alpha(2)beta(2)gamma(2) assembly contains two siroheme-[4Fe4S] cofactors bound by DsrB, two sirohydrochlorins and two [4Fe4S] centers bound by DsrA, and another four [4Fe4S] centers in the ferredoxin domains. A sulfite molecule, coordinating the siroheme, is found at the active site. The DsrC protein is bound in a cleft between DsrA and DsrB with its conserved C-terminal cysteine reaching the distal side of the siroheme. We propose a novel mechanism for the process of sulfite reduction involving DsrAB, DsrC, and the DsrMKJOP membrane complex (a membrane complex with putative disulfide/thiol reductase activity), in which two of the six electrons for reduction of sulfite derive from the membrane quinone pool. These results show that DsrC is involved in sulfite reduction, which changes the mechanism of sulfate respiration. This has important implications for models used to date ancient sulfur metabolism based on sulfur isotope fractionations.

摘要

硫酸盐还原是远古生物用于维持生命的最早的能量代谢类型之一。尽管进行了广泛研究,但关于呼吸性硫酸盐还原与能量守恒相关的方式仍存在许多问题。此过程中的一种关键酶是异化亚硫酸盐还原酶(dSiR),它含有一种独特的与西罗血红素 - [4Fe4S] 偶联的辅因子。在此,我们报道了来自普通脱硫弧菌的脱硫绿素的结构,其中dSiR DsrAB(亚硫酸盐还原酶)亚基与DsrC蛋白结合。α(2)β(2)γ(2)组装体包含由DsrB结合的两个西罗血红素 - [4Fe4S] 辅因子、由DsrA结合的两个西罗氢氯素和两个 [4Fe4S] 中心,以及铁氧化还原蛋白结构域中的另外四个 [4Fe4S] 中心。在活性位点发现一个与西罗血红素配位亚硫酸盐分子。DsrC蛋白结合在DsrA和DsrB之间的裂隙中,其保守的C末端半胱氨酸到达西罗血红素的远端。我们提出了一种涉及DsrAB、DsrC和DsrMKJOP膜复合物(一种具有假定二硫键/硫醇还原酶活性的膜复合物)的亚硫酸盐还原过程的新机制,其中用于亚硫酸盐还原的六个电子中的两个来自膜醌池。这些结果表明DsrC参与亚硫酸盐还原,这改变了硫酸盐呼吸的机制。这对于基于硫同位素分馏来确定古代硫代谢的现有模型具有重要意义。

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