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多组学分析为一种新型深海硫酸盐还原菌的硫代谢提供了见解。

Multi-omics analyses provide insights into the sulfur metabolism of a novel deep-sea sulfate-reducing bacterium.

作者信息

Wang Chong, Zheng Rikuan, Sun Chaomin

机构信息

CAS and Shandong Province Key Laboratory of Experimental Marine Biology & Center of Deep Sea Research, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, China.

Laboratory for Marine Biology and Biotechnology, Qingdao National Laboratory for Marine Science and Technology, Qingdao 266071, China.

出版信息

iScience. 2024 May 23;27(6):110095. doi: 10.1016/j.isci.2024.110095. eCollection 2024 Jun 21.

Abstract

Sulfate-reducing bacteria (SRB) are ubiquitously distributed across various biospheres and play key roles in global sulfur and carbon cycles. However, few deep-sea SRB have been cultivated and studied , limiting our understanding of the true metabolism of deep-sea SRB. Here, we firstly clarified the high abundance of SRB in deep-sea sediments and successfully isolated a sulfate-reducing bacterium (zrk46) from a cold seep sediment. Our genomic, physiological, and phylogenetic analyses indicate that strain zrk46 is a novel species, which we propose as . We found that supplementation with sulfate, thiosulfate, or sulfite promoted strain zrk46 growth by facilitating energy production through the dissimilatory sulfate reduction, which was coupled to the oxidation of organic matter in both laboratory and deep-sea conditions. Moreover, metatranscriptomic results confirmed that other deep-sea SRB also performed the dissimilatory sulfate reduction, strongly suggesting that SRB may play undocumented roles in deep-sea sulfur cycling.

摘要

硫酸盐还原菌(SRB)广泛分布于各种生物圈中,在全球硫和碳循环中发挥着关键作用。然而,很少有深海硫酸盐还原菌被培养和研究,这限制了我们对深海硫酸盐还原菌真实代谢的理解。在此,我们首先阐明了深海沉积物中硫酸盐还原菌的高丰度,并成功地从冷泉沉积物中分离出一种硫酸盐还原菌(zrk46)。我们的基因组、生理学和系统发育分析表明,菌株zrk46是一个新物种,我们将其命名为 。我们发现,在实验室和深海条件下,添加硫酸盐、硫代硫酸盐或亚硫酸盐可通过促进异化硫酸盐还原产能量来促进菌株zrk46的生长,而异化硫酸盐还原与有机物氧化相关联。此外,宏转录组学结果证实,其他深海硫酸盐还原菌也进行异化硫酸盐还原,这有力地表明硫酸盐还原菌可能在深海硫循环中发挥尚未被认识的作用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5b03/11214288/6a696a0677c5/fx1.jpg

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