Im Wan-Taek, Jung Hae-Min, Ten Leonid N, Kim Myung Kyum, Bora Nagamani, Goodfellow Michael, Lim Sangyong, Jung Jinwoo, Lee Sung-Taik
Environmental and Molecular Microbiology Lab, Department of Biological Sciences, Korea Advanced Institute of Science and Technology (KAIST), Guseong-dong 373-1, Yuseong-gu, Daejeon 305-701, Republic of Korea.
Int J Syst Evol Microbiol. 2008 Oct;58(Pt 10):2348-53. doi: 10.1099/ijs.0.64082-0.
The taxonomic positions of two environmental isolates from South Korea were established using a combination of genotypic and phenotypic data. The organisms, designated PB314(T) and Ho-08(T), were Gram-negative, rod-shaped and non-spore-forming and had chemotaxonomic properties consistent with their classification in the genus Deinococcus 16S rRNA gene tree, the highest sequence similarities being shown to the type strains of Deinococcus grandis (96.3-96.7 %) and Deinococcus indicus (96.3-96.4 %). The isolates shared relatively high 16S rRNA gene sequence similarity (98.1 %) but had a DNA-DNA relatedness value of only 22 %. Chemotaxonomic data revealed that both strains possess quinone system MK-8 as the predominant compound, C(16 : 1)omega7c and C(16 : 0) as major fatty acids and ornithine as a diamino acid in the peptidoglycan structure, corroborating our assignment of the strains to the genus Deinococcus. The results of phylogenetic analyses based on 16S rRNA gene sequences, DNA-DNA relatedness values and physiological and biochemical tests clearly demonstrated that the two strains represent distinct species. On the basis of these data, two novel species, Deinococcus aquaticus sp. nov. (type strain PB314(T) =KCTC 12552(T) =NBRC 101311(T)) and Deinococcus caeni sp. nov. (type strain Ho-08(T) =KCTC 12553(T) =NBRC 101312(T)), are proposed.
利用基因型和表型数据相结合的方法确定了来自韩国的两株环境分离株的分类地位。这两株菌分别命名为PB314(T)和Ho-08(T),为革兰氏阴性、杆状、无芽孢形成,其化学分类学特性与其在嗜皮菌属中的分类一致。在16S rRNA基因树中,它们与巨大嗜皮菌(96.3 - 96.7%)和印度嗜皮菌(96.3 - 96.4%)的模式菌株序列相似性最高。这两株分离株的16S rRNA基因序列相似性相对较高(98.1%),但DNA - DNA相关性值仅为22%。化学分类学数据显示,两株菌均以醌系统MK - 8为主要化合物,以C(16 : 1)ω7c和C(16 : 0)为主要脂肪酸,肽聚糖结构中的二氨基酸为鸟氨酸,这证实了我们将这两株菌归为嗜皮菌属的分类。基于16S rRNA基因序列、DNA - DNA相关性值以及生理生化测试的系统发育分析结果清楚地表明,这两株菌代表不同的物种。基于这些数据,提出了两个新物种,即水生嗜皮菌(Deinococcus aquaticus sp. nov.)(模式菌株PB314(T) =KCTC 12552(T) =NBRC 101311(T))和污泥嗜皮菌(Deinococcus caeni sp. nov.)(模式菌株Ho-08(T) =KCTC 12553(T) =NBRC 101312(T))。