Suppr超能文献

干扰素调控基因数据库:INTERFEROME

INTERFEROME: the database of interferon regulated genes.

作者信息

Samarajiwa Shamith A, Forster Sam, Auchettl Katie, Hertzog Paul J

机构信息

Center for Innate Immunity and Infectious Diseases, Monash Institute of Medical Research, Monash University, Clayton, Victoria, Australia.

出版信息

Nucleic Acids Res. 2009 Jan;37(Database issue):D852-7. doi: 10.1093/nar/gkn732. Epub 2008 Nov 7.

Abstract

INTERFEROME is an open access database of types I, II and III Interferon regulated genes (http://www.interferome.org) collected from analysing expression data sets of cells treated with IFNs. This database of interferon regulated genes integrates information from high-throughput experiments with annotation, ontology, orthologue sequences from 37 species, tissue expression patterns and gene regulatory information to enable a detailed investigation of the molecular mechanisms underlying IFN biology. INTERFEROME fulfils a need in infection, immunity, development and cancer research by providing computational tools to assist in identifying interferon signatures in gene lists generated by high-throughput expression technologies, and their potential molecular and biological consequences.

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c826/2686605/866a3b99421f/gkn732f1.jpg

相似文献

1
INTERFEROME: the database of interferon regulated genes.
Nucleic Acids Res. 2009 Jan;37(Database issue):D852-7. doi: 10.1093/nar/gkn732. Epub 2008 Nov 7.
2
Interferome v2.0: an updated database of annotated interferon-regulated genes.
Nucleic Acids Res. 2013 Jan;41(Database issue):D1040-6. doi: 10.1093/nar/gks1215. Epub 2012 Nov 29.
3
Systems biology of interferon responses.
J Interferon Cytokine Res. 2011 Jan;31(1):5-11. doi: 10.1089/jir.2010.0126.
5
Tissue and time specific expression pattern of interferon regulated genes in the chicken.
BMC Genomics. 2017 Mar 28;18(1):264. doi: 10.1186/s12864-017-3641-6.
6
Interferome signature dynamics during the anti-dengue immune response: a systems biology characterization.
Front Immunol. 2023 Aug 10;14:1243516. doi: 10.3389/fimmu.2023.1243516. eCollection 2023.
7
Transcriptional dysregulation of Interferome in experimental and human Multiple Sclerosis.
Sci Rep. 2017 Aug 21;7(1):8981. doi: 10.1038/s41598-017-09286-y.
9
Structural and functional-annotation of an equine whole genome oligoarray.
BMC Bioinformatics. 2009 Oct 8;10 Suppl 11(Suppl 11):S8. doi: 10.1186/1471-2105-10-S11-S8.
10
From ORFeome to biology: a functional genomics pipeline.
Genome Res. 2004 Oct;14(10B):2136-44. doi: 10.1101/gr.2576704.

引用本文的文献

2
Integrative immunology identified interferome signatures in uveitis and systemic disease-associated uveitis.
Front Immunol. 2025 Apr 9;16:1509805. doi: 10.3389/fimmu.2025.1509805. eCollection 2025.
5
Clinical Significance of Abnormal Serum LGALS3BP Expression in Patients with Idiopathic Inflammatory Myopathies.
J Inflamm Res. 2024 Nov 25;17:9697-9710. doi: 10.2147/JIR.S490210. eCollection 2024.
6
Metabolic reprogramming tips vaccinia virus infection outcomes by stabilizing interferon-γ induced IRF1.
PLoS Pathog. 2024 Oct 30;20(10):e1012673. doi: 10.1371/journal.ppat.1012673. eCollection 2024 Oct.
7
A CRISPR-Cas9 knockout screening identifies IRF2 as a key driver of OAS3/RNase L-mediated RNA decay during viral infection.
Proc Natl Acad Sci U S A. 2024 Nov 5;121(45):e2412725121. doi: 10.1073/pnas.2412725121. Epub 2024 Oct 30.
9
Effect of a loss of the mda5/ifih1 gene on the antiviral resistance in a Chinook salmon Oncorhynchus tshawytscha cell line.
PLoS One. 2024 Oct 14;19(10):e0311283. doi: 10.1371/journal.pone.0311283. eCollection 2024.

本文引用的文献

1
Interferon-inducible antiviral effectors.
Nat Rev Immunol. 2008 Jul;8(7):559-68. doi: 10.1038/nri2314.
2
High-throughput functional annotation and data mining with the Blast2GO suite.
Nucleic Acids Res. 2008 Jun;36(10):3420-35. doi: 10.1093/nar/gkn176. Epub 2008 Apr 29.
3
Database resources of the National Center for Biotechnology Information.
Nucleic Acids Res. 2008 Jan;36(Database issue):D13-21. doi: 10.1093/nar/gkm1000. Epub 2007 Nov 27.
4
The universal protein resource (UniProt).
Nucleic Acids Res. 2008 Jan;36(Database issue):D190-5. doi: 10.1093/nar/gkm895. Epub 2007 Nov 27.
5
The vertebrate genome annotation (Vega) database.
Nucleic Acids Res. 2008 Jan;36(Database issue):D753-60. doi: 10.1093/nar/gkm987. Epub 2007 Nov 14.
6
Ensembl 2008.
Nucleic Acids Res. 2008 Jan;36(Database issue):D707-14. doi: 10.1093/nar/gkm988. Epub 2007 Nov 13.
7
The interferon-stimulated genes: targets of direct signaling by interferons, double-stranded RNA, and viruses.
Curr Top Microbiol Immunol. 2007;316:233-50. doi: 10.1007/978-3-540-71329-6_12.
8
Novel interferon-beta-induced gene expression in peripheral blood cells.
J Leukoc Biol. 2007 Nov;82(5):1353-60. doi: 10.1189/jlb.0507273. Epub 2007 Aug 20.
9
The role of type I interferons in TLR responses.
Immunol Cell Biol. 2007 Aug-Sep;85(6):446-57. doi: 10.1038/sj.icb.7100099. Epub 2007 Jul 31.
10
A microarray analysis for genes regulated by interferon-tau in ovine luminal epithelial cells.
Reproduction. 2007 Jul;134(1):123-35. doi: 10.1530/REP-07-0387.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验