Poaceae genomes: going from unattainable to becoming a model clade for comparative plant genomics.
作者信息
Buell C Robin
机构信息
Department of Plant Biology, Michigan State University, East Lansing, Michigan 48824, USA.
出版信息
Plant Physiol. 2009 Jan;149(1):111-6. doi: 10.1104/pp.108.128926. Epub 2008 Nov 12.
Abstract
摘要
相似文献
1
Poaceae genomes: going from unattainable to becoming a model clade for comparative plant genomics.禾本科植物基因组：从遥不可及到成为比较植物基因组学的模式分支。
Plant Physiol. 2009 Jan;149(1):111-6. doi: 10.1104/pp.108.128926. Epub 2008 Nov 12.
2
Sorghum bicolor - an important species for comparative grass genomics and a source of beneficial genes for agriculture.高粱——禾本科植物比较基因组学的重要物种及农业有益基因的来源。
Curr Opin Plant Biol. 2002 Apr;5(2):118-21. doi: 10.1016/s1369-5266(02)00232-7.
3
Sugarcane genomics: depicting the complex genome of an important tropical crop.甘蔗基因组学：描绘一种重要热带作物的复杂基因组
Curr Opin Plant Biol. 2002 Apr;5(2):122-7. doi: 10.1016/s1369-5266(02)00234-0.
4
Comparative DNA sequence analysis of wheat and rice genomes.小麦和水稻基因组的比较DNA序列分析。
Genome Res. 2003 Aug;13(8):1818-27. doi: 10.1101/gr.1113003.
5
Molecular, phylogenetic and comparative genomic analysis of the cytokinin oxidase/dehydrogenase gene family in the Poaceae.禾本科细胞分裂素氧化酶/脱氢酶基因家族的分子、系统发育和比较基因组分析。
Plant Biotechnol J. 2012 Jan;10(1):67-82. doi: 10.1111/j.1467-7652.2011.00645.x. Epub 2011 Aug 15.
6
Comparative genomics of grasses tolerant to aluminum.耐铝禾本科植物的比较基因组学
Genet Mol Res. 2007 Dec 11;6(4):1178-89.
7
Comparison of orthologous loci from small grass genomes Brachypodium and rice: implications for wheat genomics and grass genome annotation.小草基因组短柄草属与水稻直系同源基因座的比较：对小麦基因组学和禾本科基因组注释的启示
Plant J. 2007 Feb;49(4):704-17. doi: 10.1111/j.1365-313X.2006.02991.x. Epub 2007 Jan 18.
8
PGSB/MIPS Plant Genome Information Resources and Concepts for the Analysis of Complex Grass Genomes.PGSB/MIPS植物基因组信息资源及复杂禾本科植物基因组分析概念
Methods Mol Biol. 2016;1374:165-86. doi: 10.1007/978-1-4939-3167-5_8.
9
Comparative genomics of grass EST libraries reveals previously uncharacterized splicing events in crop plants.草 EST 文库的比较基因组学揭示了作物中以前未被描述的剪接事件。
BMC Plant Biol. 2015 Feb 5;15:39. doi: 10.1186/s12870-015-0431-7.
10
Structural characterization of Brachypodium genome and its syntenic relationship with rice and wheat.短柄草基因组的结构特征及其与水稻和小麦的共线性关系。
Plant Mol Biol. 2009 May;70(1-2):47-61. doi: 10.1007/s11103-009-9456-3. Epub 2009 Jan 29.
引用本文的文献
1
Burning questions for a warming and changing world: 15 unknowns in plant abiotic stress.热议话题：全球变暖与变化背景下的 15 个植物非生物胁迫未知因素
Plant Cell. 2023 Jan 2;35(1):67-108. doi: 10.1093/plcell/koac263.
2
Identification and analysis of unitary loss of long-established protein-coding genes in Poaceae shows evidences for biased gene loss and putatively functional transcription of relics.禾本科中已确立的蛋白质编码基因单一缺失的鉴定与分析显示出基因丢失偏向性及遗迹假定性功能转录的证据。
BMC Evol Biol. 2015 Apr 18;15:66. doi: 10.1186/s12862-015-0345-x.
3
Comparative transcriptome analysis within the Lolium/Festuca species complex reveals high sequence conservation.黑麦草/羊茅物种复合体中的比较转录组分析揭示了高度的序列保守性。
BMC Genomics. 2015 Mar 28;16(1):249. doi: 10.1186/s12864-015-1447-y.
4
Signal integration on plant promoters: a case study in maize.植物启动子上的信号整合：以玉米为例的研究。
Plant Signal Behav. 2013 Sep;8(9). doi: 10.4161/psb.25389. Epub 2013 Jun 27.
5
Transcriptome sequencing and de novo analysis for Ma bamboo (Dendrocalamus latiflorus Munro) using the Illumina platform.利用 Illumina 平台对毛竹（Dendrocalamus latiflorus Munro）进行转录组测序和从头分析。
PLoS One. 2012;7(10):e46766. doi: 10.1371/journal.pone.0046766. Epub 2012 Oct 3.
6
Evolution and expression of tandem duplicated maize flavonol synthase genes.串联重复玉米类黄酮合酶基因的进化与表达。
Front Plant Sci. 2012 May 25;3:101. doi: 10.3389/fpls.2012.00101. eCollection 2012.
7
Whole-genome sequencing and intensive analysis of the undomesticated soybean (Glycine soja Sieb. and Zucc.) genome.全基因组测序和对野生大豆（Glycine soja Sieb. and Zucc.）基因组的深入分析。
Proc Natl Acad Sci U S A. 2010 Dec 21;107(51):22032-7. doi: 10.1073/pnas.1009526107. Epub 2010 Dec 3.
8
Conservation, rearrangement, and deletion of gene pairs during the evolution of four grass genomes.在四个草基因组的进化过程中，基因对的保守、重排和缺失。
DNA Res. 2010 Dec;17(6):343-52. doi: 10.1093/dnares/dsq022. Epub 2010 Sep 23.
9
Genome-wide characterization of the biggest grass, bamboo, based on 10,608 putative full-length cDNA sequences.基于 10608 条假定全长 cDNA 序列，对最大的草本植物、竹子进行全基因组特征分析。
BMC Plant Biol. 2010 Jun 18;10:116. doi: 10.1186/1471-2229-10-116.
10
Evolutionary insights on C4 photosynthetic subtypes in grasses from genomics and phylogenetics.从基因组学和系统发生学角度看禾本科 C4 光合亚型的进化。
Genome Biol Evol. 2009 Jul 20;1:221-30. doi: 10.1093/gbe/evp020.
本文引用的文献
1
Caenorhabditis elegans mutant allele identification by whole-genome sequencing.通过全基因组测序鉴定秀丽隐杆线虫突变等位基因
Nat Methods. 2008 Oct;5(10):865-7. doi: 10.1038/nmeth.1249. Epub 2008 Aug 1.
2
High-throughput sequencing provides insights into genome variation and evolution in Salmonella Typhi.高通量测序为伤寒沙门氏菌的基因组变异和进化提供了见解。
Nat Genet. 2008 Aug;40(8):987-93. doi: 10.1038/ng.195. Epub 2008 Jul 27.
3
Characterizing the mouse ES cell transcriptome with Illumina sequencing.利用Illumina测序技术对小鼠胚胎干细胞转录组进行特征分析。
Genomics. 2008 Oct;92(4):187-94. doi: 10.1016/j.ygeno.2008.05.011. Epub 2008 Aug 3.
4
Stem cell transcriptome profiling via massive-scale mRNA sequencing.通过大规模mRNA测序进行干细胞转录组分析。
Nat Methods. 2008 Jul;5(7):613-9. doi: 10.1038/nmeth.1223. Epub 2008 May 30.
5
Construction, alignment and analysis of twelve framework physical maps that represent the ten genome types of the genus Oryza.构建、比对和分析代表稻属十种基因组类型的十二幅框架物理图谱。
Genome Biol. 2008;9(2):R45. doi: 10.1186/gb-2008-9-2-r45. Epub 2008 Feb 28.
6
Genome-wide in situ exon capture for selective resequencing.用于选择性重测序的全基因组原位外显子捕获
Nat Genet. 2007 Dec;39(12):1522-7. doi: 10.1038/ng.2007.42. Epub 2007 Nov 4.
7
Microarray-based genomic selection for high-throughput resequencing.基于微阵列的高通量重测序基因组选择
Nat Methods. 2007 Nov;4(11):907-9. doi: 10.1038/nmeth1109. Epub 2007 Oct 14.
8
Direct selection of human genomic loci by microarray hybridization.通过微阵列杂交直接选择人类基因组位点。
Nat Methods. 2007 Nov;4(11):903-5. doi: 10.1038/nmeth1111. Epub 2007 Oct 14.
9
Sequencing multiple and diverse rice varieties. Connecting whole-genome variation with phenotypes.对多个不同水稻品种进行测序。将全基因组变异与表型联系起来。
Plant Physiol. 2006 May;141(1):26-31. doi: 10.1104/pp.106.077313.
10
The map-based sequence of the rice genome.水稻基因组的基于图谱的序列。
Nature. 2005 Aug 11;436(7052):793-800. doi: 10.1038/nature03895.
Zotero 插件