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超能文献

Analyzing ChIP-chip data using bioconductor.

作者信息

Toedling Joern, Huber Wolfgang

机构信息

EMBL European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, United Kingdom.

出版信息

PLoS Comput Biol. 2008 Nov;4(11):e1000227. doi: 10.1371/journal.pcbi.1000227. Epub 2008 Nov 28.

DOI:10.1371/journal.pcbi.1000227

PMID:19043553

原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC2582686/

Abstract

摘要

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0f88/2582686/850ac2b5140b/pcbi.1000227.g001.jpg

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Statistics for ChIP-chip and DNase hypersensitivity experiments on NimbleGen arrays.

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相似文献

Analyzing ChIP-chip data using bioconductor.

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rMAT--an R/Bioconductor package for analyzing ChIP-chip experiments.

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本文引用的文献

CMARRT: a tool for the analysis of ChIP-chip data from tiling arrays by incorporating the correlation structure.

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Genome Res. 2008 Jan;18(1):46-59. doi: 10.1101/gr.6654808. Epub 2007 Nov 27.

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Biometrics. 2007 Sep;63(3):787-96. doi: 10.1111/j.1541-0420.2007.00768.x.

Ringo--an R/Bioconductor package for analyzing ChIP-chip readouts.

BMC Bioinformatics. 2007 Jun 26;8:221. doi: 10.1186/1471-2105-8-221.

Mixture modeling for genome-wide localization of transcription factors.

Biometrics. 2007 Mar;63(1):10-21. doi: 10.1111/j.1541-0420.2005.00659.x.

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Bioinformatics. 2007 Apr 15;23(8):988-97. doi: 10.1093/bioinformatics/btm052. Epub 2007 Mar 25.

Statistics for ChIP-chip and DNase hypersensitivity experiments on NimbleGen arrays.

Methods Enzymol. 2006;411:270-82. doi: 10.1016/S0076-6879(06)11014-9.

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