Dutta Shuchismita, Burkhardt Kyle, Young Jasmine, Swaminathan Ganesh J, Matsuura Takanori, Henrick Kim, Nakamura Haruki, Berman Helen M
Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB), Department of Chemistry and Chemical Biology, Rutgers, The State University of New Jersey, Piscataway, NJ 08854-8087, USA.
Mol Biotechnol. 2009 May;42(1):1-13. doi: 10.1007/s12033-008-9127-7. Epub 2008 Dec 10.
The Protein Data Bank (PDB) is the repository for three-dimensional structures of biological macromolecules, determined by experimental methods. The data in the archive is free and easily available via the Internet from any of the worldwide centers managing this global archive. These data are used by scientists, researchers, bioinformatics specialists, educators, students, and general audiences to understand biological phenomenon at a molecular level. Analysis of this structural data also inspires and facilitates new discoveries in science. This chapter describes the tools and methods currently used for deposition, processing, and release of data in the PDB. References to future enhancements are also included.
蛋白质数据库(PDB)是通过实验方法确定的生物大分子三维结构的储存库。存档中的数据免费且可通过互联网从管理这个全球存档的任何一个全球中心轻松获取。科学家、研究人员、生物信息学专家、教育工作者、学生和普通大众利用这些数据在分子水平上理解生物现象。对这些结构数据的分析也激发并促进了科学上的新发现。本章描述了目前用于PDB数据存入、处理和发布的工具和方法。还包括了对未来改进的参考。