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mRNA 降解的细胞生物学

Cell biology of mRNA decay.

作者信息

Grünwald David, Singer Robert H, Czaplinski Kevin

机构信息

Albert Einstein College of Medicine, Anatomy and Structural Biology and Gruss-Lipper Biophotonics Center, Bronx, Albert Einstein College of Medicine, New York, USA.

出版信息

Methods Enzymol. 2008;448:553-77. doi: 10.1016/S0076-6879(08)02627-X.

Abstract

Studying single mRNA molecules has added new dimensions to our understanding of gene expression and the life cycle of mRNA in cells. Advances in microscopes and detection technology have opened access to single molecule research to most researchers interested in molecular biology. Here we provide an overview technique for single molecule studies of RNA in either fixed samples or in living cells. As part of a volume on mRNA turnover, it is increasingly relevant, because many of the recent advances in studies of mRNA turnover have suggested that there is non-homogeneous distribution of turnover factors in the cell. For this reason, understanding of spatial relationships between mRNA and mRNA turnover factors should enrich our understanding of this process.

摘要

对单个信使核糖核酸(mRNA)分子的研究为我们理解基因表达以及mRNA在细胞中的生命周期增添了新的维度。显微镜和检测技术的进步使大多数对分子生物学感兴趣的研究人员都能够开展单分子研究。在此,我们概述了一种用于在固定样本或活细胞中对RNA进行单分子研究的技术。作为关于mRNA周转的一卷内容的一部分,它的相关性日益增加,因为mRNA周转研究中的许多最新进展表明,周转因子在细胞中存在非均匀分布。因此,了解mRNA与mRNA周转因子之间的空间关系应能丰富我们对这一过程的理解。

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本文引用的文献

1
Stress granules: the Tao of RNA triage.
Trends Biochem Sci. 2008 Mar;33(3):141-50. doi: 10.1016/j.tibs.2007.12.003.
2
Highly inclined thin illumination enables clear single-molecule imaging in cells.
Nat Methods. 2008 Feb;5(2):159-61. doi: 10.1038/nmeth1171. Epub 2008 Jan 6.
3
Exploring dynamics in living cells by tracking single particles.
Cell Biochem Biophys. 2007;48(1):1-15. doi: 10.1007/s12013-007-0010-0.
4
5
P bodies and the control of mRNA translation and degradation.
Mol Cell. 2007 Mar 9;25(5):635-46. doi: 10.1016/j.molcel.2007.02.011.
6
The highways and byways of mRNA decay.
Nat Rev Mol Cell Biol. 2007 Feb;8(2):113-26. doi: 10.1038/nrm2104.
7
P bodies: at the crossroads of post-transcriptional pathways.
Nat Rev Mol Cell Biol. 2007 Jan;8(1):9-22. doi: 10.1038/nrm2080.
8
An unconventional human Ccr4-Caf1 deadenylase complex in nuclear cajal bodies.
Mol Cell Biol. 2007 Mar;27(5):1686-95. doi: 10.1128/MCB.01483-06. Epub 2006 Dec 18.
9
Single-molecule biology: what is it and how does it work?
Mol Cell. 2006 Nov 3;24(3):317-29. doi: 10.1016/j.molcel.2006.10.017.
10
Intranuclear binding kinetics and mobility of single native U1 snRNP particles in living cells.
Mol Biol Cell. 2006 Dec;17(12):5017-27. doi: 10.1091/mbc.e06-06-0559. Epub 2006 Sep 20.

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