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巨型噬菌体

Jumbo bacteriophages.

作者信息

Hendrix R W

机构信息

Pittsburgh Bacteriophage Institute, Department of Biological Sciences, University of Pittsburgh, Pittsburgh, PA 15260, USA.

出版信息

Curr Top Microbiol Immunol. 2009;328:229-40. doi: 10.1007/978-3-540-68618-7_7.

Abstract

There is currently a handful of genome sequences available for tailed bacteriophages with genomes of more than 200 kbp of DNA, designated here as giant or jumbo phages. The majority of the proteins predicted from the genome sequences of these phages have no matches in the current sequence databases, and the genomes themselves are diverse enough to preclude the sorts of detailed comparative analysis that has benefited study of the smaller phages, for which hundreds of genome sequences are available. However, it is informative to extrapolate the better known genome organizations and mechanisms of evolution seen in the smaller phages to the jumbo phages. In this way, we see that the jumbo phages encode the same functions as the smaller phages, supplemented with large numbers of mostly small genes of mostly undiscovered functions. A case can be made that the jumbo phages evolved from smaller tailed phages, possibly in a process mediated by the constraints imposed on genome size by capsid size.

摘要

目前,有少数基因组序列超过200 kbp DNA的有尾噬菌体可供使用,在此将其指定为巨型或大型噬菌体。从这些噬菌体的基因组序列预测的大多数蛋白质在当前序列数据库中没有匹配项,而且基因组本身的多样性足以排除对较小噬菌体进行的那种详细比较分析,对于较小噬菌体已有数百个基因组序列可供研究。然而,将较小噬菌体中更知名的基因组组织和进化机制外推到大型噬菌体是有参考价值的。通过这种方式,我们发现大型噬菌体编码的功能与较小噬菌体相同,还补充了大量大多功能未知的小基因。可以认为大型噬菌体是从较小的有尾噬菌体进化而来的,可能是在衣壳大小对基因组大小施加的限制所介导的过程中进化而来。

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