Sobie Eric A
Department of Pharmacology and Systems Therapeutics, Mount Sinai School of Medicine, New York, New York 10029, USA.
Biophys J. 2009 Feb 18;96(4):1264-74. doi: 10.1016/j.bpj.2008.10.056.
Computational models of electrical activity and calcium signaling in cardiac myocytes are important tools for understanding physiology. The sensitivity of these models to changes in parameters is often not well-understood, however, because parameter evaluation can be a time-consuming, tedious process. I demonstrate here what I believe is a novel method for rapidly determining how changes in parameters affect outputs. In three models of the ventricular action potential, parameters were randomized, repeated simulations were run, important outputs were calculated, and multivariable regression was performed on the collected results. Random parameters included both maximal rates of ion transport and gating variable characteristics. The procedure generated simplified, empirical models that predicted outputs resulting from new sets of input parameters. The linear regression models were quite accurate, despite nonlinearities in the mechanistic models. Moreover, the regression coefficients, which represent parameter sensitivities, were robust, even when parameters were varied over a wide range. Most importantly, a side-by-side comparison of two similar models identified fundamental differences in model behavior, and revealed model predictions that were both consistent with, and inconsistent with, experimental data. This new method therefore shows promise as a tool for the characterization and assessment of computational models. The general strategy may also suggest methods for integrating traditional quantitative models with large-scale data sets obtained using high-throughput technologies.
心肌细胞电活动和钙信号的计算模型是理解生理学的重要工具。然而,这些模型对参数变化的敏感性往往没有得到很好的理解,因为参数评估可能是一个耗时、繁琐的过程。我在此展示一种我认为是快速确定参数变化如何影响输出的新方法。在三个心室动作电位模型中,对参数进行随机化处理,运行重复模拟,计算重要输出,并对收集到的结果进行多变量回归分析。随机参数包括离子转运的最大速率和门控变量特征。该过程生成了简化的经验模型,可预测新输入参数集产生的输出。尽管机制模型存在非线性,但线性回归模型相当准确。此外,代表参数敏感性的回归系数很稳健,即使参数在很宽的范围内变化也是如此。最重要的是,对两个相似模型的并排比较确定了模型行为的根本差异,并揭示了与实验数据一致和不一致的模型预测。因此,这种新方法有望成为表征和评估计算模型的工具。该通用策略还可能为将传统定量模型与使用高通量技术获得的大规模数据集整合提供方法。